Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DSB71_RS16265 Genome accession   NZ_CP030768
Coordinates   3200258..3200863 (+) Length   201 a.a.
NCBI ID   WP_001195026.1    Uniprot ID   A0A2T3RX43
Organism   Escherichia coli strain 2017C-4173W12     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3195258..3205863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS16230 rsmS 3195960..3196124 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  DSB71_RS16235 priC 3196138..3196665 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  DSB71_RS16240 ybaN 3196735..3197112 (+) 378 WP_001188905.1 DUF454 family protein -
  DSB71_RS16250 apt 3197265..3197816 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DSB71_RS16255 dnaX 3197945..3199876 (+) 1932 WP_000121995.1 DNA polymerase III subunit gamma/tau -
  DSB71_RS16260 ybaB 3199929..3200258 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DSB71_RS16265 recR 3200258..3200863 (+) 606 WP_001195026.1 recombination mediator RecR Machinery gene
  DSB71_RS16270 htpG 3200973..3202847 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  DSB71_RS16280 adk 3203028..3203672 (+) 645 WP_001220233.1 adenylate kinase -
  DSB71_RS16285 hemH 3203804..3204766 (+) 963 WP_001250117.1 ferrochelatase -
  DSB71_RS16290 aes 3204763..3205722 (-) 960 WP_000801694.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21904.96 Da        Isoelectric Point: 5.0698

>NTDB_id=260408 DSB71_RS16265 WP_001195026.1 3200258..3200863(+) (recR) [Escherichia coli strain 2017C-4173W12]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=260408 DSB71_RS16265 WP_001195026.1 3200258..3200863(+) (recR) [Escherichia coli strain 2017C-4173W12]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTACCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGGCGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RX43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.729

99.005

0.453
  recR Bacillus subtilis subsp. subtilis str. 168

45.226

99.005

0.448