Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB71_RS12770 Genome accession   NZ_CP030768
Coordinates   2497729..2498205 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 2017C-4173W12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492729..2503205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS12745 - 2495767..2495925 (+) 159 WP_001323397.1 DUF905 family protein -
  DSB71_RS12755 - 2496080..2496898 (+) 819 WP_001234653.1 DUF932 domain-containing protein -
  DSB71_RS12765 - 2497240..2497713 (+) 474 WP_000855064.1 antirestriction protein -
  DSB71_RS12770 radC 2497729..2498205 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  DSB71_RS12775 - 2498268..2498489 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  DSB71_RS12780 - 2498652..2499020 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DSB71_RS12785 - 2499110..2499208 (+) 99 Protein_2327 TA system toxin CbtA family protein -
  DSB71_RS12790 mtnK 2499948..2501207 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  DSB71_RS12795 mtnA 2501217..2502332 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  DSB71_RS12800 - 2502363..2503004 (+) 642 WP_000439687.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=260398 DSB71_RS12770 WP_001186775.1 2497729..2498205(+) (radC) [Escherichia coli strain 2017C-4173W12]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260398 DSB71_RS12770 WP_001186775.1 2497729..2498205(+) (radC) [Escherichia coli strain 2017C-4173W12]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment