Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB71_RS08965 Genome accession   NZ_CP030768
Coordinates   1741472..1742140 (-) Length   222 a.a.
NCBI ID   WP_110844059.1    Uniprot ID   -
Organism   Escherichia coli strain 2017C-4173W12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736472..1747140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS08935 rfaQ 1736650..1737708 (-) 1059 WP_113621716.1 lipopolysaccharide core heptosyltransferase RfaQ -
  DSB71_RS08940 waaA 1738121..1739398 (+) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  DSB71_RS08945 coaD 1739406..1739885 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  DSB71_RS08950 mutM 1739924..1740733 (-) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  DSB71_RS08955 rpmG 1740831..1740998 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  DSB71_RS08960 rpmB 1741019..1741255 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  DSB71_RS08965 radC 1741472..1742140 (-) 669 WP_110844059.1 DNA repair protein RadC Machinery gene
  DSB71_RS08970 coaBC 1742312..1743532 (+) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DSB71_RS08975 dut 1743510..1743968 (+) 459 WP_000976070.1 dUTP diphosphatase -
  DSB71_RS08980 slmA 1744075..1744671 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  DSB71_RS08985 pyrE 1744708..1745349 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  DSB71_RS08990 rph 1745415..1746131 (-) 717 WP_001247093.1 ribonuclease PH -
  DSB71_RS09000 yicC 1746258..1747121 (+) 864 WP_000621344.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25239.30 Da        Isoelectric Point: 7.5478

>NTDB_id=260377 DSB71_RS08965 WP_110844059.1 1741472..1742140(-) (radC) [Escherichia coli strain 2017C-4173W12]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARHYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=260377 DSB71_RS08965 WP_110844059.1 1741472..1742140(-) (radC) [Escherichia coli strain 2017C-4173W12]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCATTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAAGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.099

100

0.491

Multiple sequence alignment