Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB71_RS04990 Genome accession   NZ_CP030768
Coordinates   991502..991978 (+) Length   158 a.a.
NCBI ID   WP_001186761.1    Uniprot ID   -
Organism   Escherichia coli strain 2017C-4173W12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 986502..996978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS04970 - 989062..989517 (+) 456 WP_001309747.1 IrmA family protein -
  DSB71_RS29485 - 989660..989749 (+) 90 WP_225385657.1 DUF905 family protein -
  DSB71_RS04980 - 989928..990749 (+) 822 WP_001234555.1 DUF932 domain-containing protein -
  DSB71_RS04985 - 991013..991486 (+) 474 WP_001538139.1 antirestriction protein -
  DSB71_RS04990 radC 991502..991978 (+) 477 WP_001186761.1 RadC family protein Machinery gene
  DSB71_RS04995 - 992041..992262 (+) 222 WP_000692315.1 DUF987 domain-containing protein -
  DSB71_RS05000 - 992281..992925 (+) 645 WP_000086757.1 hypothetical protein -
  DSB71_RS05005 - 992975..993355 (+) 381 WP_001285599.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DSB71_RS05010 - 993432..993809 (+) 378 WP_000854689.1 TA system toxin CbtA family protein -
  DSB71_RS05015 - 993806..994294 (+) 489 WP_000761698.1 DUF5983 family protein -
  DSB71_RS05020 - 994311..994508 (+) 198 WP_000839250.1 DUF957 domain-containing protein -
  DSB71_RS05025 - 994593..995438 (+) 846 WP_001446750.1 DUF4942 domain-containing protein -
  DSB71_RS05030 - 995507..995902 (+) 396 WP_000208381.1 DUF6088 family protein -
  DSB71_RS05035 - 995895..996828 (+) 934 Protein_932 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17635.23 Da        Isoelectric Point: 7.2523

>NTDB_id=260361 DSB71_RS04990 WP_001186761.1 991502..991978(+) (radC) [Escherichia coli strain 2017C-4173W12]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALHHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260361 DSB71_RS04990 WP_001186761.1 991502..991978(+) (radC) [Escherichia coli strain 2017C-4173W12]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTTATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAACGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGCACCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386

Multiple sequence alignment