Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB71_RS04495 Genome accession   NZ_CP030768
Coordinates   910051..910527 (+) Length   158 a.a.
NCBI ID   WP_001747787.1    Uniprot ID   -
Organism   Escherichia coli strain 2017C-4173W12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 905051..915527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS04455 - 905348..905803 (+) 456 WP_000581493.1 IrmA family protein -
  DSB71_RS04460 - 905923..907461 (-) 1539 WP_000099193.1 IS66-like element ISEc22 family transposase -
  DSB71_RS04465 tnpB 907510..907857 (-) 348 WP_024173998.1 IS66 family insertion sequence element accessory protein TnpB -
  DSB71_RS04470 - 907854..908258 (-) 405 WP_000839179.1 transposase -
  DSB71_RS04475 - 908344..908577 (+) 234 WP_024173997.1 DUF905 family protein -
  DSB71_RS04485 - 908677..909495 (+) 819 WP_047938428.1 DUF932 domain-containing protein -
  DSB71_RS04490 - 909550..910035 (+) 486 WP_000849596.1 antirestriction protein -
  DSB71_RS04495 radC 910051..910527 (+) 477 WP_001747787.1 RadC family protein Machinery gene
  DSB71_RS04500 - 910614..910835 (+) 222 WP_000692347.1 DUF987 domain-containing protein -
  DSB71_RS04505 - 910915..911283 (+) 369 WP_001285612.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DSB71_RS04510 - 911373..911750 (+) 378 WP_000854720.1 TA system toxin CbtA family protein -
  DSB71_RS04515 - 911747..912235 (+) 489 WP_000777672.1 DUF5983 family protein -
  DSB71_RS04520 - 912247..912444 (+) 198 WP_000839238.1 DUF957 domain-containing protein -
  DSB71_RS04525 - 912537..913403 (+) 867 WP_001290180.1 DUF4942 domain-containing protein -
  DSB71_RS04530 - 913475..913738 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  DSB71_RS04535 - 913735..914061 (+) 327 WP_000779482.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17627.21 Da        Isoelectric Point: 7.2517

>NTDB_id=260360 DSB71_RS04495 WP_001747787.1 910051..910527(+) (radC) [Escherichia coli strain 2017C-4173W12]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260360 DSB71_RS04495 WP_001747787.1 910051..910527(+) (radC) [Escherichia coli strain 2017C-4173W12]
ATGCAGCAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399