Detailed information NTG0260356

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DSB71_RS02850
• Genome accession: NZ_CP030768
• Coordinates: 586926..587918 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2017C-4173W12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 581926..592918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DSB71_RS02820	-	582398..583261 (+)	864	WP_001223109.1	tetratricopeptide repeat protein	-
DSB71_RS02825	pphB	583286..583942 (+)	657	WP_001139307.1	protein-serine/threonine phosphatase	-
DSB71_RS02830	-	583984..584220 (-)	237	WP_000562983.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
DSB71_RS02835	-	584231..585658 (-)	1428	WP_000863184.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
DSB71_RS02840	-	585658..586251 (-)	594	WP_001237176.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
DSB71_RS02845	-	586398..586805 (+)	408	WP_001208065.1	MarR family transcriptional regulator	-
DSB71_RS02850	rpoS	586926..587918 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DSB71_RS02855	nlpD	587981..589120 (-)	1140	WP_001272592.1	murein hydrolase activator NlpD	-
DSB71_RS02860	pcm	589260..589886 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DSB71_RS02865	surE	589880..590641 (-)	762	WP_001305779.1	5'/3'-nucleotidase SurE	-
DSB71_RS02870	truD	590622..591671 (-)	1050	WP_000568953.1	tRNA pseudouridine(13) synthase TruD	-
DSB71_RS02875	ispF	591668..592147 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DSB71_RS02880	ispD	592147..592857 (-)	711	WP_000246141.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=260356 DSB71_RS02850 WP_000081550.1 586926..587918(-) (rpoS) [Escherichia coli strain 2017C-4173W12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=260356 DSB71_RS02850 WP_000081550.1 586926..587918(-) (rpoS) [Escherichia coli strain 2017C-4173W12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715