Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DSB71_RS02580 Genome accession   NZ_CP030768
Coordinates   536319..536834 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017C-4173W12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 531319..541834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB71_RS02555 ygaZ 531718..532455 (+) 738 WP_000445659.1 L-valine exporter subunit YgaZ -
  DSB71_RS02560 ygaH 532445..532780 (+) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  DSB71_RS02565 emrR 532871..533401 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DSB71_RS02570 emrA 533528..534700 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DSB71_RS02575 emrB 534717..536255 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DSB71_RS02580 luxS 536319..536834 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DSB71_RS02585 gshA 536984..538540 (-) 1557 WP_000611791.1 glutamate--cysteine ligase -
  DSB71_RS02590 yqaA 538613..539041 (-) 429 WP_001287454.1 YqaA family protein -
  DSB71_RS02595 yqaB 539038..539604 (-) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DSB71_RS02625 csrA 541196..541381 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=260353 DSB71_RS02580 WP_001130211.1 536319..536834(-) (luxS) [Escherichia coli strain 2017C-4173W12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=260353 DSB71_RS02580 WP_001130211.1 536319..536834(-) (luxS) [Escherichia coli strain 2017C-4173W12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731