Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DSB73_RS12545 Genome accession   NZ_CP030767
Coordinates   2210306..2210782 (+) Length   158 a.a.
NCBI ID   WP_001186192.1    Uniprot ID   A0A0H3JIA8
Organism   Escherichia coli strain 2017C-4109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2205306..2215782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSB73_RS12510 - 2205660..2206873 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -
  DSB73_RS12515 - 2206913..2207443 (+) 531 Protein_2180 hypothetical protein -
  DSB73_RS12520 - 2207579..2208262 (+) 684 WP_000775497.1 hypothetical protein -
  DSB73_RS12525 - 2208278..2208688 (+) 411 WP_000846711.1 hypothetical protein -
  DSB73_RS12535 - 2208909..2209730 (+) 822 WP_001234544.1 DUF932 domain-containing protein -
  DSB73_RS12540 - 2209812..2210291 (+) 480 WP_000860080.1 antirestriction protein -
  DSB73_RS12545 radC 2210306..2210782 (+) 477 WP_001186192.1 RadC family protein Machinery gene
  DSB73_RS12550 yeeT 2210845..2211066 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  DSB73_RS12555 cbeA 2211140..2211508 (+) 369 WP_001285587.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  DSB73_RS12560 cbtA 2211597..2211970 (+) 374 Protein_2188 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DSB73_RS12565 yeeW 2211967..2212161 (+) 195 WP_000988600.1 DUF5983 family protein -
  DSB73_RS12570 - 2212207..2212287 (+) 81 Protein_2190 hypothetical protein -
  DSB73_RS29885 yoeF 2212602..2212958 (+) 357 WP_001303565.1 EutP/PduV family microcompartment system protein -
  DSB73_RS12585 tmaR 2213059..2213388 (-) 330 WP_000450409.1 DUF496 family protein -
  DSB73_RS12590 yeeA 2213560..2214618 (-) 1059 WP_001202488.1 FUSC family protein -
  DSB73_RS12595 sbmC 2214817..2215290 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=260290 DSB73_RS12545 WP_001186192.1 2210306..2210782(+) (radC) [Escherichia coli strain 2017C-4109]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260290 DSB73_RS12545 WP_001186192.1 2210306..2210782(+) (radC) [Escherichia coli strain 2017C-4109]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3JIA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392