Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPD_RS08880 Genome accession   NC_008533
Coordinates   1677777..1678487 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae D39     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1672777..1683487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS08860 (SPD_1662) - 1673432..1673680 (-) 249 WP_000364990.1 YneF family protein -
  SPD_RS08865 (SPD_1663) treC 1673822..1675447 (-) 1626 WP_000171206.1 alpha,alpha-phosphotrehalase -
  SPD_RS08875 (SPD_1664) treP 1675625..1677592 (-) 1968 WP_000514308.1 PTS system trehalose-specific EIIBC component -
  SPD_RS08880 (SPD_1665) treR 1677777..1678487 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPD_RS08885 (SPD_1666) - 1678643..1679949 (+) 1307 Protein_1680 transposase -
  SPD_RS08890 (SPD_1667) - 1680024..1680950 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein -
  SPD_RS08895 (SPD_1668) amiE 1680961..1682028 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  SPD_RS08900 (SPD_1669) amiD 1682037..1682963 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=26028 SPD_RS08880 WP_000760673.1 1677777..1678487(+) (treR) [Streptococcus pneumoniae D39]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=26028 SPD_RS08880 WP_000760673.1 1677777..1678487(+) (treR) [Streptococcus pneumoniae D39]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTTCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment