Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DRF63_RS06630 Genome accession   NZ_CP030753
Coordinates   1435470..1435979 (-) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae strain S4074     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1430470..1440979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRF63_RS06605 (DRF63_06600) tehA 1430938..1431888 (-) 951 WP_005598173.1 dicarboxylate transporter/tellurite-resistance protein TehA -
  DRF63_RS06610 (DRF63_06605) hxpB 1431984..1432634 (-) 651 WP_005598175.1 hexitol phosphatase HxpB -
  DRF63_RS11450 (DRF63_06610) - 1432812..1432859 (-) 48 Protein_1290 SEC-C metal-binding domain-containing protein -
  DRF63_RS11415 (DRF63_06615) - 1432872..1433433 (-) 562 Protein_1291 flavin reductase family protein -
  DRF63_RS06625 (DRF63_06620) - 1433520..1435364 (-) 1845 WP_005598177.1 ABC transporter ATP-binding protein -
  DRF63_RS06630 (DRF63_06625) luxS 1435470..1435979 (-) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  DRF63_RS06635 (DRF63_06630) - 1436034..1438700 (-) 2667 WP_005598181.1 PqiB family protein -
  DRF63_RS06640 (DRF63_06635) fur 1438848..1439297 (-) 450 WP_005598183.1 ferric iron uptake transcriptional regulator -
  DRF63_RS06645 (DRF63_06640) fldA 1439328..1439852 (-) 525 WP_005598185.1 flavodoxin FldA -
  DRF63_RS06650 (DRF63_06645) ybfE 1439874..1440158 (-) 285 WP_005620439.1 LexA regulated protein -
  DRF63_RS06655 (DRF63_06650) ybaK 1440367..1440843 (-) 477 WP_005598189.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=260247 DRF63_RS06630 WP_005598178.1 1435470..1435979(-) (luxS) [Actinobacillus pleuropneumoniae strain S4074]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=260247 DRF63_RS06630 WP_005598178.1 1435470..1435979(-) (luxS) [Actinobacillus pleuropneumoniae strain S4074]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTACCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728