Detailed information NTG0260208

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC46_RS28780
• Genome accession: NZ_CP030351
• Coordinates: 6111336..6112340 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AR_460
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6106336..6117340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC46_RS28750 (CSC46_5830)	fghA	6106428..6107279 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
CSC46_RS28755 (CSC46_5831)	ispF	6107350..6107823 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC46_RS28760 (CSC46_5832)	truD	6107820..6108887 (+)	1068	WP_031628559.1	tRNA pseudouridine(13) synthase TruD	-
CSC46_RS28765 (CSC46_5833)	surE	6108875..6109624 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
CSC46_RS28770 (CSC46_5834)	-	6109657..6110292 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
CSC46_RS28775	-	6110338..6111231 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
CSC46_RS28780 (CSC46_5836)	rpoS	6111336..6112340 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
CSC46_RS28785 (CSC46_5837)	fdxA	6112766..6113089 (-)	324	WP_003092272.1	ferredoxin FdxA	-
CSC46_RS28790 (CSC46_5838)	mutS	6113156..6115723 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
CSC46_RS28800	-	6115849..6116860 (-)	1012	Protein_5569	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=260208 CSC46_RS28780 WP_003113871.1 6111336..6112340(+) (rpoS) [Pseudomonas aeruginosa strain AR_460]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=260208 CSC46_RS28780 WP_003113871.1 6111336..6112340(+) (rpoS) [Pseudomonas aeruginosa strain AR_460]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653