Detailed information NTG0260202

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: CXR48_RS17665
• Genome accession: NZ_CP025341
• Coordinates: 3585343..3586488 (+)
• Length: 381 a.a.
• NCBI ID: WP_088037228.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain CMT-6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3580343..3591488

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXR48_RS17645	-	3580817..3581533 (-)	717	WP_014306017.1	Crp/Fnr family transcriptional regulator	-
CXR48_RS17650	narK	3581631..3582821 (-)	1191	WP_003151073.1	nitrate transporter NarK	-
CXR48_RS17655	argS	3582956..3584626 (-)	1671	WP_003151071.1	arginine--tRNA ligase	-
CXR48_RS17660	-	3584623..3585051 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
CXR48_RS17665	rapF	3585343..3586488 (+)	1146	WP_088037228.1	tetratricopeptide repeat protein	Regulator
CXR48_RS17670	-	3586472..3586591 (+)	120	WP_003151066.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
CXR48_RS17675	-	3586789..3586992 (+)	204	WP_003151064.1	helix-turn-helix transcriptional regulator	-
CXR48_RS17680	-	3587006..3587209 (+)	204	WP_003151062.1	hypothetical protein	-
CXR48_RS17690	-	3587617..3587898 (+)	282	WP_014306021.1	hypothetical protein	-
CXR48_RS17695	-	3587942..3588454 (+)	513	WP_032859656.1	stage II sporulation protein M	-
CXR48_RS17705	-	3589045..3589263 (-)	219	WP_003151056.1	helix-turn-helix transcriptional regulator	-
CXR48_RS17710	speB	3589433..3590305 (-)	873	WP_003151054.1	agmatinase	-
CXR48_RS17715	speE	3590365..3591195 (-)	831	WP_003151052.1	spermidine synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45325.46 Da
• Isoelectric Point: 4.9264

>NTDB_id=260202 CXR48_RS17665 WP_088037228.1 3585343..3586488(+) (rapF) [Bacillus velezensis strain CMT-6]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELDQREYLSAIKFFKKAETKLSFIKDTIDKAEYFFKMSEVYYYLKQTYVS
TDYARQAYEIYKAQSSYDIRLIQCQSLFGANFLDLKLYDRAITHFQKAFSLAETEKQPQLMGRTLYNIALCKQSLNDYEA
AITYVEKAIDVFESAKMTPSLPQAYFLMTQIHYKLERYDKALEYHKKGVIYSEESADSVYLHEFEFLKSLYVNGPDEDAM
KRSFDFLESKMMYADIEDFALDAAKYYHKLEDYKKASTYFLKVEEARQHIQGGVTFYEAEV

Nucleotide

• Length: 1146 bp

>NTDB_id=260202 CXR48_RS17665 WP_088037228.1 3585343..3586488(+) (rapF) [Bacillus velezensis strain CMT-6]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGATCAGCGGGAATATTTGTCGGCTATAAAATTTTTTAAAAAGGCTGAGACGAAACTCTCATTTA
TTAAGGATACTATTGATAAAGCCGAGTACTTTTTCAAGATGTCTGAAGTCTACTACTATTTGAAACAAACGTATGTATCT
ACCGATTACGCAAGGCAGGCATATGAAATATATAAAGCTCAGTCGTCATACGATATCAGGCTCATACAATGCCAATCCTT
ATTCGGAGCAAATTTCCTGGATTTAAAACTATATGATCGGGCAATTACTCACTTTCAAAAGGCTTTTTCTTTGGCAGAAA
CAGAAAAACAGCCTCAATTAATGGGCAGGACGCTGTATAACATCGCACTTTGCAAACAAAGCCTGAACGACTATGAAGCA
GCTATAACTTATGTTGAAAAAGCCATTGATGTTTTTGAAAGTGCTAAAATGACCCCTTCTTTGCCCCAAGCATATTTTTT
AATGACACAGATTCATTATAAATTAGAAAGATACGACAAAGCGCTCGAGTATCATAAAAAAGGAGTTATCTATTCCGAAG
AGTCAGCAGATTCAGTTTATTTACACGAATTCGAATTTTTAAAATCTTTGTATGTGAACGGACCTGATGAGGATGCAATG
AAACGGAGTTTTGACTTTTTGGAAAGTAAGATGATGTATGCAGATATAGAAGATTTTGCTCTTGATGCAGCTAAATATTA
TCACAAACTTGAAGATTATAAAAAAGCTTCAACATACTTTTTAAAAGTTGAAGAAGCAAGACAGCATATTCAAGGGGGGG
TAACTTTTTATGAAGCTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (223-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	74.541	100	0.745
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53