Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CXR48_RS12930 Genome accession   NZ_CP025341
Coordinates   2673761..2674513 (-) Length   250 a.a.
NCBI ID   WP_069448914.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2668761..2679513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS12905 mreC 2669197..2670060 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  CXR48_RS12910 mreB 2670091..2671104 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  CXR48_RS12915 radC 2671196..2671891 (-) 696 WP_003152646.1 RadC family protein -
  CXR48_RS12920 - 2671923..2672492 (-) 570 WP_003152645.1 Maf family protein -
  CXR48_RS12925 - 2672633..2673634 (-) 1002 WP_069448913.1 SPOR domain-containing protein -
  CXR48_RS12930 comC 2673761..2674513 (-) 753 WP_069448914.1 prepilin peptidase Machinery gene
  CXR48_RS12935 - 2674653..2675945 (-) 1293 WP_052586400.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  CXR48_RS12940 - 2676004..2678646 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  CXR48_RS12945 - 2679099..2679290 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27180.86 Da        Isoelectric Point: 9.2521

>NTDB_id=260185 CXR48_RS12930 WP_069448914.1 2673761..2674513(-) (comC) [Bacillus velezensis strain CMT-6]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAVRGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=260185 CXR48_RS12930 WP_069448914.1 2673761..2674513(-) (comC) [Bacillus velezensis strain CMT-6]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGTCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588

Multiple sequence alignment