Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CXR48_RS12135 Genome accession   NZ_CP025341
Coordinates   2525347..2526114 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2520347..2531114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS12115 - 2520549..2521361 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  CXR48_RS12120 ccpN 2521387..2522025 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  CXR48_RS12125 glyS 2522126..2524165 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  CXR48_RS12130 glyQ 2524158..2525045 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  CXR48_RS12135 recO 2525347..2526114 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  CXR48_RS12140 - 2526151..2526294 (-) 144 WP_007408286.1 YqzL family protein -
  CXR48_RS12145 era 2526450..2527355 (-) 906 WP_003152978.1 GTPase Era -
  CXR48_RS12150 - 2527336..2527746 (-) 411 WP_003152976.1 cytidine deaminase -
  CXR48_RS12155 - 2527870..2528244 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  CXR48_RS12160 ybeY 2528225..2528698 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  CXR48_RS12165 - 2528699..2530831 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=260178 CXR48_RS12135 WP_003152982.1 2525347..2526114(-) (recO) [Bacillus velezensis strain CMT-6]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=260178 CXR48_RS12135 WP_003152982.1 2525347..2526114(-) (recO) [Bacillus velezensis strain CMT-6]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment