Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CXR48_RS07155 Genome accession   NZ_CP025341
Coordinates   1394121..1394405 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389121..1399405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS07130 - 1390367..1391275 (+) 909 WP_044053169.1 ketopantoate reductase family protein -
  CXR48_RS07135 - 1391306..1392538 (-) 1233 WP_044053170.1 aminopeptidase -
  CXR48_RS07140 - 1392639..1392773 (-) 135 WP_003154559.1 protein YkpC -
  CXR48_RS07145 mreBH 1392845..1393852 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  CXR48_RS07155 abrB 1394121..1394405 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CXR48_RS07160 - 1394578..1395882 (+) 1305 WP_014304932.1 ATP-binding protein -
  CXR48_RS07165 - 1395884..1396711 (+) 828 WP_063174792.1 gamma-glutamylcyclotransferase -
  CXR48_RS07170 ktrC 1396752..1397417 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  CXR48_RS07175 ade 1397566..1399299 (+) 1734 WP_003154552.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=260161 CXR48_RS07155 WP_024085249.1 1394121..1394405(+) (abrB) [Bacillus velezensis strain CMT-6]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=260161 CXR48_RS07155 WP_024085249.1 1394121..1394405(+) (abrB) [Bacillus velezensis strain CMT-6]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment