Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CXR48_RS06935 Genome accession   NZ_CP025341
Coordinates   1357753..1358217 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CMT-6     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352753..1363217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS06915 - 1353233..1355053 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  CXR48_RS06920 - 1355029..1356248 (-) 1220 Protein_1309 aminotransferase A -
  CXR48_RS19575 - 1356449..1356610 (-) 162 WP_007409608.1 hypothetical protein -
  CXR48_RS06930 cheV 1356799..1357710 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  CXR48_RS06935 kre 1357753..1358217 (-) 465 WP_003154622.1 YkyB family protein Regulator
  CXR48_RS06940 - 1358340..1359632 (-) 1293 WP_024085236.1 MFS transporter -
  CXR48_RS06945 - 1359708..1360202 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  CXR48_RS06950 - 1360277..1361140 (-) 864 WP_024085238.1 metallophosphoesterase -
  CXR48_RS06955 fadH 1361284..1362048 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  CXR48_RS19765 - 1362158..1362703 (+) 546 Protein_1317 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=260159 CXR48_RS06935 WP_003154622.1 1357753..1358217(-) (kre) [Bacillus velezensis strain CMT-6]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=260159 CXR48_RS06935 WP_003154622.1 1357753..1358217(-) (kre) [Bacillus velezensis strain CMT-6]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment