Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CXR48_RS01765 Genome accession   NZ_CP025341
Coordinates   354791..355228 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CMT-6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 349791..360228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR48_RS19665 - 350371..350535 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  CXR48_RS01735 - 350649..351851 (+) 1203 WP_015388720.1 GTP-binding protein -
  CXR48_RS01740 - 351916..353052 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  CXR48_RS01745 - 353067..353501 (+) 435 WP_057080003.1 RDD family protein -
  CXR48_RS01750 - 353618..353893 (+) 276 WP_369719109.1 YckD family protein -
  CXR48_RS19440 - 353997..354113 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  CXR48_RS01755 - 354112..354330 (+) 219 Protein_310 family 1 glycosylhydrolase -
  CXR48_RS01760 nin/comJ 354371..354769 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  CXR48_RS01765 nucA/comI 354791..355228 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CXR48_RS01770 hxlB 355587..356144 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  CXR48_RS01775 hxlA 356141..356776 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  CXR48_RS01780 - 357008..357370 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=260139 CXR48_RS01765 WP_003156588.1 354791..355228(-) (nucA/comI) [Bacillus velezensis strain CMT-6]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=260139 CXR48_RS01765 WP_003156588.1 354791..355228(-) (nucA/comI) [Bacillus velezensis strain CMT-6]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment