Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | CSC38_RS24455 | Genome accession | NZ_CP030337 |
| Coordinates | 4567385..4567861 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain AR_451 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 4562385..4572861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC38_RS24425 (CSC38_4525) | cah | 4562506..4565352 (+) | 2847 | WP_021526504.1 | calcium-binding autotransporter Cah | - |
| CSC38_RS24430 (CSC38_4526) | - | 4565423..4565618 (+) | 196 | Protein_4372 | DUF905 family protein | - |
| CSC38_RS24440 (CSC38_4527) | - | 4565736..4566554 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| CSC38_RS24450 (CSC38_4528) | - | 4566896..4567369 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| CSC38_RS24455 (CSC38_4529) | radC | 4567385..4567861 (+) | 477 | WP_001186775.1 | RadC family protein | Machinery gene |
| CSC38_RS24460 (CSC38_4530) | - | 4567924..4568145 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| CSC38_RS24465 (CSC38_4532) | - | 4568308..4568676 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| CSC38_RS24470 (CSC38_4533) | - | 4568766..4569143 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| CSC38_RS24475 (CSC38_4534) | - | 4569140..4569628 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| CSC38_RS24480 (CSC38_4535) | - | 4569645..4569821 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| CSC38_RS27230 (CSC38_4536) | - | 4569927..4570076 (+) | 150 | Protein_4381 | hypothetical protein | - |
| CSC38_RS28040 | - | 4570046..4570180 (+) | 135 | Protein_4382 | transcriptional regulator | - |
| CSC38_RS27930 | - | 4570443..4570748 (+) | 306 | Protein_4383 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=260106 CSC38_RS24455 WP_001186775.1 4567385..4567861(+) (radC) [Escherichia coli strain AR_451]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=260106 CSC38_RS24455 WP_001186775.1 4567385..4567861(+) (radC) [Escherichia coli strain AR_451]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |