Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FORC42_RS17290 Genome accession   NZ_CP025318
Coordinates   3204960..3205589 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FORC_042     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3193882..3216763 3204960..3205589 within 0


Gene organization within MGE regions


Location: 3193882..3216763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC42_RS17230 (FORC42_3145) - 3193882..3194901 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  FORC42_RS17235 (FORC42_3147) yccA 3195309..3195968 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  FORC42_RS17240 (FORC42_3148) tusE 3196059..3196388 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  FORC42_RS17245 (FORC42_3149) yccX 3196385..3196663 (-) 279 WP_024215606.1 acylphosphatase -
  FORC42_RS17250 (FORC42_3150) rlmI 3196758..3197948 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  FORC42_RS17255 (FORC42_3151) hspQ 3198006..3198323 (+) 318 WP_001358373.1 heat shock protein HspQ -
  FORC42_RS17260 (FORC42_3152) yccU 3198368..3198781 (-) 414 WP_001301418.1 CoA-binding protein -
  FORC42_RS17265 (FORC42_3154) yccT 3198954..3199616 (+) 663 WP_000847783.1 DUF2057 family protein -
  FORC42_RS17270 (FORC42_3155) mgsA 3199712..3200170 (+) 459 WP_000424181.1 methylglyoxal synthase -
  FORC42_RS17275 (FORC42_3156) helD 3200202..3202256 (-) 2055 WP_000420533.1 DNA helicase IV -
  FORC42_RS17280 (FORC42_3157) yccF 3202379..3202825 (+) 447 WP_001261231.1 YccF domain-containing protein -
  FORC42_RS17285 (FORC42_3158) yccS 3202835..3204997 (+) 2163 WP_000875044.1 YccS family putative transporter -
  FORC42_RS17290 (FORC42_3159) sxy/tfoX 3204960..3205589 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FORC42_RS17295 (FORC42_3160) sulA 3205808..3206317 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FORC42_RS17305 (FORC42_3162) ompA 3206674..3207714 (+) 1041 WP_000750416.1 porin OmpA -
  FORC42_RS17310 (FORC42_3163) matP 3207790..3208242 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FORC42_RS17315 (FORC42_3164) ycbZ 3208428..3210188 (+) 1761 WP_089645600.1 Lon protease family protein -
  FORC42_RS17320 (FORC42_3165) fabA 3210257..3210775 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  FORC42_RS17325 rmf 3210845..3211012 (-) 168 WP_000828648.1 ribosome modulation factor -
  FORC42_RS17330 (FORC42_3166) pqiC 3211268..3211831 (-) 564 WP_000759123.1 membrane integrity-associated transporter subunit PqiC -
  FORC42_RS17335 (FORC42_3167) pqiB 3211828..3213468 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  FORC42_RS17340 (FORC42_3168) pqiA 3213473..3214726 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  FORC42_RS17345 (FORC42_3169) uup 3214856..3216763 (-) 1908 WP_000053089.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=260070 FORC42_RS17290 WP_000839153.1 3204960..3205589(-) (sxy/tfoX) [Escherichia coli strain FORC_042]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=260070 FORC42_RS17290 WP_000839153.1 3204960..3205589(-) (sxy/tfoX) [Escherichia coli strain FORC_042]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment