Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CSC38_RS16315 Genome accession   NZ_CP030337
Coordinates   2984775..2985944 (+) Length   389 a.a.
NCBI ID   WP_001161856.1    Uniprot ID   -
Organism   Escherichia coli strain AR_451     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2979775..2990944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC38_RS16300 (CSC38_2971) - 2980290..2981966 (+) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -
  CSC38_RS16305 (CSC38_2972) kdsB 2981976..2982716 (+) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSC38_RS16310 (CSC38_2973) - 2982713..2984740 (+) 2028 WP_000579513.1 capsular polysaccharide biosynthesis protein -
  CSC38_RS16315 (CSC38_2974) kpsS 2984775..2985944 (+) 1170 WP_001161856.1 capsular biosynthesis protein Regulator
  CSC38_RS16320 (CSC38_2975) kfiD 2986283..2987461 (-) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  CSC38_RS16325 (CSC38_2976) kfiC 2987503..2989065 (-) 1563 WP_001305085.1 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  CSC38_RS16330 - 2989226..2990260 (+) 1035 Protein_2897 IS481 family transposase -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46397.64 Da        Isoelectric Point: 10.0934

>NTDB_id=260066 CSC38_RS16315 WP_001161856.1 2984775..2985944(+) (kpsS) [Escherichia coli strain AR_451]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=260066 CSC38_RS16315 WP_001161856.1 2984775..2985944(+) (kpsS) [Escherichia coli strain AR_451]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

100

0.398