Detailed information NTG0260061

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC38_RS14525
• Genome accession: NZ_CP030337
• Coordinates: 2625487..2626479 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_451
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2620487..2631479

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC38_RS14505 (CSC38_2619)	ygbM	2621125..2621901 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
CSC38_RS14510 (CSC38_2620)	ygbN	2621990..2623354 (+)	1365	WP_000104433.1	GntP family transporter	-
CSC38_RS14515 (CSC38_2621)	-	2623497..2624540 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
CSC38_RS14520 (CSC38_2623)	-	2624765..2625316 (+)	552	WP_001179444.1	flavodoxin family protein	-
CSC38_RS14525 (CSC38_2624)	rpoS	2625487..2626479 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CSC38_RS14530 (CSC38_2625)	nlpD	2626542..2627636 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
CSC38_RS14535 (CSC38_2626)	pcm	2627821..2628447 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CSC38_RS14540 (CSC38_2627)	surE	2628441..2629202 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CSC38_RS14545 (CSC38_2628)	truD	2629183..2630232 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
CSC38_RS14550 (CSC38_2629)	ispF	2630229..2630708 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC38_RS14555 (CSC38_2630)	ispD	2630708..2631418 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=260061 CSC38_RS14525 WP_000081550.1 2625487..2626479(-) (rpoS) [Escherichia coli strain AR_451]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=260061 CSC38_RS14525 WP_000081550.1 2625487..2626479(-) (rpoS) [Escherichia coli strain AR_451]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715