Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SPD_RS05500 Genome accession   NC_008533
Coordinates   1047610..1048680 (+) Length   356 a.a.
NCBI ID   WP_000817882.1    Uniprot ID   Q7ZAK7
Organism   Streptococcus pneumoniae D39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1042610..1053680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS12090 - 1043481..1043612 (+) 132 WP_079117188.1 LPXTG cell wall anchor domain-containing protein -
  SPD_RS11655 - 1043576..1043761 (-) 186 WP_075825865.1 hypothetical protein -
  SPD_RS05485 (SPD_1019) ylqF 1043843..1044694 (+) 852 WP_000201314.1 ribosome biogenesis GTPase YlqF -
  SPD_RS05490 (SPD_1020) - 1044681..1045460 (+) 780 WP_000201141.1 ribonuclease HII -
  SPD_RS05495 (SPD_1021) - 1045476..1047026 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  SPD_RS05500 (SPD_1023) xerS 1047610..1048680 (+) 1071 WP_000817882.1 tyrosine recombinase XerS Machinery gene
  SPD_RS05505 (SPD_1024) - 1048753..1049742 (-) 990 WP_000873993.1 lipoate--protein ligase -
  SPD_RS05510 (SPD_1025) lpdA 1049806..1051509 (-) 1704 WP_001162912.1 dihydrolipoyl dehydrogenase -
  SPD_RS05515 (SPD_1026) - 1051555..1052598 (-) 1044 WP_000752705.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41171.21 Da        Isoelectric Point: 9.6220

>NTDB_id=26006 SPD_RS05500 WP_000817882.1 1047610..1048680(+) (xerS) [Streptococcus pneumoniae D39]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=26006 SPD_RS05500 WP_000817882.1 1047610..1048680(+) (xerS) [Streptococcus pneumoniae D39]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAACTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCTACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7ZAK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

100

100

1

Multiple sequence alignment