Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CSC38_RS10870 Genome accession   NZ_CP030337
Coordinates   1880801..1881277 (+) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli strain AR_451     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1875801..1886277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC38_RS10830 (CSC38_1917) istB 1877329..1878075 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CSC38_RS10840 (CSC38_1918) - 1878158..1878508 (+) 351 Protein_1882 hypothetical protein -
  CSC38_RS10845 (CSC38_1919) - 1878524..1878934 (+) 411 WP_000846703.1 hypothetical protein -
  CSC38_RS10855 (CSC38_1920) - 1879155..1879973 (+) 819 WP_001542275.1 DUF932 domain-containing protein -
  CSC38_RS10860 (CSC38_1921) - 1879973..1880218 (+) 246 WP_001164966.1 hypothetical protein -
  CSC38_RS10865 (CSC38_1922) - 1880312..1880785 (+) 474 WP_001542276.1 antirestriction protein -
  CSC38_RS10870 (CSC38_1923) radC 1880801..1881277 (+) 477 WP_001186200.1 RadC family protein Machinery gene
  CSC38_RS10875 (CSC38_1924) yeeT 1881340..1881561 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  CSC38_RS10880 (CSC38_1925) - 1881580..1882224 (+) 645 WP_000086752.1 hypothetical protein -
  CSC38_RS10885 (CSC38_1926) cbeA 1882240..1882608 (+) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CSC38_RS10890 (CSC38_1927) cbtA 1882697..1883071 (+) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CSC38_RS10895 (CSC38_1928) yeeW 1883068..1883262 (+) 195 WP_000988600.1 DUF5983 family protein -
  CSC38_RS10900 - 1883308..1883388 (+) 81 Protein_1893 hypothetical protein -
  CSC38_RS28005 - 1883877..1884059 (+) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  CSC38_RS10915 (CSC38_1929) tmaR 1884160..1884489 (-) 330 WP_000450409.1 DUF496 family protein -
  CSC38_RS10920 (CSC38_1930) yeeA 1884661..1885719 (-) 1059 WP_001200889.1 FUSC family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=260047 CSC38_RS10870 WP_001186200.1 1880801..1881277(+) (radC) [Escherichia coli strain AR_451]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=260047 CSC38_RS10870 WP_001186200.1 1880801..1881277(+) (radC) [Escherichia coli strain AR_451]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392