Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CXP47_RS08840 Genome accession   NZ_CP025309
Coordinates   1959923..1960558 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain Lzh-T5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1954923..1965558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP47_RS08820 (CXP47_08820) - 1955168..1956100 (+) 933 WP_009047814.1 ABC transporter ATP-binding protein -
  CXP47_RS08825 (CXP47_08825) - 1956097..1956876 (+) 780 WP_007931651.1 ABC transporter permease -
  CXP47_RS08830 (CXP47_08830) - 1956925..1957440 (-) 516 WP_009047815.1 DUF2062 domain-containing protein -
  CXP47_RS08835 (CXP47_08835) comA 1957589..1959820 (+) 2232 WP_101282016.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CXP47_RS08840 (CXP47_08840) exbB 1959923..1960558 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CXP47_RS08845 (CXP47_08845) - 1960555..1960983 (+) 429 WP_009047818.1 ExbD/TolR family protein -
  CXP47_RS08850 (CXP47_08850) lpxK 1960983..1961993 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  CXP47_RS08855 (CXP47_08855) - 1962017..1962202 (+) 186 WP_007931663.1 Trm112 family protein -
  CXP47_RS08860 (CXP47_08860) kdsB 1962199..1962963 (+) 765 WP_028683135.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CXP47_RS08865 (CXP47_08865) - 1962963..1963427 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  CXP47_RS08870 (CXP47_08870) murB 1963424..1964443 (+) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -
  CXP47_RS08875 (CXP47_08875) - 1964692..1965162 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=260016 CXP47_RS08840 WP_009047817.1 1959923..1960558(+) (exbB) [Pseudomonas chlororaphis strain Lzh-T5]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=260016 CXP47_RS08840 WP_009047817.1 1959923..1960558(+) (exbB) [Pseudomonas chlororaphis strain Lzh-T5]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCAGTCGGCATCATTGC
CGAACGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTATCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGTTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment