Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CSC39_RS18575 Genome accession   NZ_CP030331
Coordinates   3438375..3438980 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AR_452     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3433375..3443980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC39_RS18550 (CSC39_3386) aes 3433412..3434371 (+) 960 WP_000801832.1 acetyl esterase -
  CSC39_RS18555 (CSC39_3387) hemH 3434368..3435330 (-) 963 WP_001250088.1 ferrochelatase -
  CSC39_RS18560 (CSC39_3388) adk 3435566..3436210 (-) 645 WP_001220233.1 adenylate kinase -
  CSC39_RS18570 (CSC39_3389) htpG 3436391..3438265 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  CSC39_RS18575 (CSC39_3390) recR 3438375..3438980 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CSC39_RS18580 (CSC39_3391) ybaB 3438980..3439309 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CSC39_RS18585 (CSC39_3392) dnaX 3439362..3441293 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  CSC39_RS18590 (CSC39_3393) apt 3441422..3441973 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CSC39_RS18600 (CSC39_3394) ybaN 3442126..3442503 (-) 378 WP_001188905.1 DUF454 family protein -
  CSC39_RS18605 (CSC39_3395) priC 3442573..3443100 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  CSC39_RS18610 (CSC39_3396) rsmS 3443114..3443275 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  CSC39_RS26570 - 3443328..3443426 (-) 99 Protein_3256 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=259998 CSC39_RS18575 WP_001195025.1 3438375..3438980(-) (recR) [Escherichia coli strain AR_452]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=259998 CSC39_RS18575 WP_001195025.1 3438375..3438980(-) (recR) [Escherichia coli strain AR_452]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment