Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CXP43_RS07560 Genome accession   NZ_CP025308
Coordinates   1478166..1479302 (-) Length   378 a.a.
NCBI ID   WP_101293899.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-a42     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1465915..1511037 1478166..1479302 within 0


Gene organization within MGE regions


Location: 1465915..1511037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP43_RS07470 (CXP43_07470) - 1465915..1467243 (+) 1329 WP_014417660.1 PhoH family protein -
  CXP43_RS07475 (CXP43_07475) - 1467238..1467714 (-) 477 WP_007409680.1 hypothetical protein -
  CXP43_RS07480 (CXP43_07480) - 1467818..1468105 (+) 288 Protein_1404 glutaminase -
  CXP43_RS07485 (CXP43_07485) - 1468831..1469133 (+) 303 WP_101293888.1 hypothetical protein -
  CXP43_RS07490 (CXP43_07490) - 1469283..1469525 (-) 243 WP_101293889.1 hypothetical protein -
  CXP43_RS07495 (CXP43_07495) - 1469635..1470297 (+) 663 WP_101293890.1 hypothetical protein -
  CXP43_RS07505 (CXP43_07505) - 1471478..1471891 (-) 414 WP_101293892.1 hypothetical protein -
  CXP43_RS07510 (CXP43_07510) - 1472091..1472435 (-) 345 WP_101293893.1 hypothetical protein -
  CXP43_RS21615 - 1472466..1472621 (-) 156 WP_169061493.1 hypothetical protein -
  CXP43_RS07515 (CXP43_07515) - 1472611..1472976 (-) 366 WP_224960719.1 hypothetical protein -
  CXP43_RS07520 (CXP43_07520) - 1473124..1473525 (-) 402 WP_101293895.1 hypothetical protein -
  CXP43_RS07525 (CXP43_07525) - 1473705..1473923 (+) 219 WP_014417667.1 helix-turn-helix domain-containing protein -
  CXP43_RS07530 (CXP43_07530) - 1473971..1474252 (+) 282 WP_101293896.1 hypothetical protein -
  CXP43_RS07535 (CXP43_07535) - 1474304..1474549 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  CXP43_RS07540 (CXP43_07540) - 1475047..1475763 (+) 717 WP_224960726.1 hypothetical protein -
  CXP43_RS07545 (CXP43_07545) - 1475800..1476108 (-) 309 WP_224960729.1 hypothetical protein -
  CXP43_RS07550 (CXP43_07550) - 1476121..1477545 (-) 1425 WP_101293999.1 lipase -
  CXP43_RS07555 (CXP43_07555) - 1477595..1477960 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  CXP43_RS21620 - 1478003..1478176 (-) 174 WP_169061491.1 hypothetical protein -
  CXP43_RS07560 (CXP43_07560) rapC 1478166..1479302 (-) 1137 WP_101293899.1 RapH N-terminal domain-containing protein Regulator
  CXP43_RS07565 (CXP43_07565) - 1479484..1480314 (-) 831 WP_101293900.1 SHOCT domain-containing protein -
  CXP43_RS07570 (CXP43_07570) - 1480481..1481284 (-) 804 WP_224960735.1 SH3 domain-containing protein -
  CXP43_RS07575 (CXP43_07575) - 1481372..1484011 (-) 2640 WP_101293901.1 phage tail protein -
  CXP43_RS07580 (CXP43_07580) - 1484026..1484781 (-) 756 WP_101293902.1 phage tail domain-containing protein -
  CXP43_RS07585 (CXP43_07585) - 1484832..1491677 (-) 6846 WP_101293903.1 phage tail tape measure protein -
  CXP43_RS07590 (CXP43_07590) - 1492423..1493556 (-) 1134 WP_101293904.1 GIY-YIG nuclease family protein -
  CXP43_RS07595 (CXP43_07595) - 1493731..1494609 (+) 879 WP_101293905.1 tyrosine-type recombinase/integrase -
  CXP43_RS07600 (CXP43_07600) - 1494735..1494944 (+) 210 WP_072589059.1 hypothetical protein -
  CXP43_RS07605 (CXP43_07605) - 1494990..1495274 (+) 285 WP_101293906.1 hypothetical protein -
  CXP43_RS07610 (CXP43_07610) - 1495373..1495582 (+) 210 WP_072589061.1 hypothetical protein -
  CXP43_RS07615 (CXP43_07615) - 1495579..1495875 (-) 297 WP_072589062.1 hypothetical protein -
  CXP43_RS21625 - 1495925..1496092 (-) 168 WP_169061554.1 hypothetical protein -
  CXP43_RS07620 (CXP43_07620) - 1496104..1496583 (-) 480 WP_101293907.1 hypothetical protein -
  CXP43_RS07625 (CXP43_07625) - 1496580..1496741 (-) 162 WP_014471786.1 XkdX family protein -
  CXP43_RS07630 (CXP43_07630) - 1496742..1497125 (-) 384 WP_101293908.1 hypothetical protein -
  CXP43_RS07635 (CXP43_07635) - 1497122..1498444 (-) 1323 WP_101293909.1 hypothetical protein -
  CXP43_RS07640 (CXP43_07640) - 1498483..1499052 (-) 570 WP_224960742.1 HNH endonuclease -
  CXP43_RS07645 (CXP43_07645) - 1499063..1499257 (-) 195 WP_101293910.1 helix-turn-helix domain-containing protein -
  CXP43_RS07650 (CXP43_07650) - 1499662..1502508 (-) 2847 WP_224960745.1 hypothetical protein -
  CXP43_RS07655 (CXP43_07655) - 1502853..1503749 (-) 897 WP_101293911.1 hypothetical protein -
  CXP43_RS07660 (CXP43_07660) - 1504293..1505258 (+) 966 WP_101293912.1 AimR family lysis-lysogeny pheromone receptor -
  CXP43_RS21430 - 1505288..1505431 (+) 144 WP_157829250.1 hypothetical protein -
  CXP43_RS21435 - 1505656..1505814 (+) 159 WP_157829251.1 hypothetical protein -
  CXP43_RS07665 (CXP43_07665) - 1506003..1506350 (+) 348 WP_014471796.1 hypothetical protein -
  CXP43_RS07670 (CXP43_07670) - 1506367..1506645 (+) 279 WP_101293914.1 hypothetical protein -
  CXP43_RS07675 (CXP43_07675) - 1506652..1507209 (+) 558 WP_101293915.1 hypothetical protein -
  CXP43_RS07680 (CXP43_07680) - 1507289..1507870 (+) 582 WP_101293916.1 hypothetical protein -
  CXP43_RS07685 (CXP43_07685) - 1507903..1508091 (+) 189 WP_101293917.1 hypothetical protein -
  CXP43_RS07690 (CXP43_07690) - 1508079..1508612 (+) 534 WP_101293918.1 hypothetical protein -
  CXP43_RS07695 (CXP43_07695) - 1508612..1509061 (+) 450 WP_101293919.1 hypothetical protein -
  CXP43_RS07700 (CXP43_07700) - 1509328..1511037 (+) 1710 WP_101293920.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44640.00 Da        Isoelectric Point: 4.9328

>NTDB_id=259966 CXP43_RS07560 WP_101293899.1 1478166..1479302(-) (rapC) [Bacillus velezensis strain Lzh-a42]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGALIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAVYKHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILAYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=259966 CXP43_RS07560 WP_101293899.1 1478166..1479302(-) (rapC) [Bacillus velezensis strain Lzh-a42]
TTGAAACAGTTAATCTCCTCATCAAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGTATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTTGAACAAGAAATAAATGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGGCATCAATTAATGCTTGATTATCTTGAGCCAAAAACGATGAATGAAGAACGTCCTGAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ATGAAATTGAGCGAGCGGAGTTTCATTACAAAGTTGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATTGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGATATGGAGTACCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCTAGATTAGCTGGATCCGCTCTATATAATTTAGGGATCTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGCGTTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGACGGAACAGCTGTTTATAAACATGGACTGTCTTTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTGAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTGCTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(222-249)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

45.144

100

0.455

Multiple sequence alignment