Detailed information NTG0259966

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CXP43_RS07560
• Genome accession: NZ_CP025308
• Coordinates: 1478166..1479302 (-)
• Length: 378 a.a.
• NCBI ID: WP_101293899.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Lzh-a42
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1473166..1484302

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXP43_RS07525 (CXP43_07525)	-	1473705..1473923 (+)	219	WP_014417667.1	helix-turn-helix domain-containing protein	-
CXP43_RS07530 (CXP43_07530)	-	1473971..1474252 (+)	282	WP_101293896.1	hypothetical protein	-
CXP43_RS07535 (CXP43_07535)	-	1474304..1474549 (-)	246	WP_041481754.1	helix-turn-helix domain-containing protein	-
CXP43_RS07540 (CXP43_07540)	-	1475047..1475763 (+)	717	WP_224960726.1	hypothetical protein	-
CXP43_RS07545 (CXP43_07545)	-	1475800..1476108 (-)	309	WP_224960729.1	hypothetical protein	-
CXP43_RS07550 (CXP43_07550)	-	1476121..1477545 (-)	1425	WP_101293999.1	lipase	-
CXP43_RS07555 (CXP43_07555)	-	1477595..1477960 (+)	366	WP_014417672.1	DUF1433 domain-containing protein	-
CXP43_RS21620	-	1478003..1478176 (-)	174	WP_169061491.1	hypothetical protein	-
CXP43_RS07560 (CXP43_07560)	rapC	1478166..1479302 (-)	1137	WP_101293899.1	RapH N-terminal domain-containing protein	Regulator
CXP43_RS07565 (CXP43_07565)	-	1479484..1480314 (-)	831	WP_101293900.1	SHOCT domain-containing protein	-
CXP43_RS07570 (CXP43_07570)	-	1480481..1481284 (-)	804	WP_224960735.1	SH3 domain-containing protein	-
CXP43_RS07575 (CXP43_07575)	-	1481372..1484011 (-)	2640	WP_101293901.1	phage tail protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44640.00 Da
• Isoelectric Point: 4.9328

>NTDB_id=259966 CXP43_RS07560 WP_101293899.1 1478166..1479302(-) (rapC) [Bacillus velezensis strain Lzh-a42]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGALIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAVYKHGLSLAKNLNDEVLTKMFDFLNALYIDDNKETLN
EILAYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide

• Length: 1137 bp

>NTDB_id=259966 CXP43_RS07560 WP_101293899.1 1478166..1479302(-) (rapC) [Bacillus velezensis strain Lzh-a42]
TTGAAACAGTTAATCTCCTCATCAAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGTATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTTGAACAAGAAATAAATGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGGCATCAATTAATGCTTGATTATCTTGAGCCAAAAACGATGAATGAAGAACGTCCTGAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGCTGTCACTTGTAGCCG
ATGAAATTGAGCGAGCGGAGTTTCATTACAAAGTTGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATTGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGATATGGAGTACCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCTAGATTAGCTGGATCCGCTCTATATAATTTAGGGATCTCCTCTTTTTCTGAAGAAAAGTTCGATGAGGCTATT
GAGTATTTCAAAGAAGGAGCGTTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGACGGAACAGCTGTTTATAAACATGGACTGTCTTTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTTCCTGAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTGCTTATTTAGAATTTAAAACAATGTTTTCCGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (222-249)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	48.148	100	0.481
rapF	Bacillus subtilis subsp. subtilis str. 168	45.144	100	0.455