Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CXP43_RS05400 Genome accession   NZ_CP025308
Coordinates   1043552..1044130 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain Lzh-a42     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038552..1049130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP43_RS22160 - 1039053..1039568 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  CXP43_RS22165 - 1039812..1040471 (-) 660 Protein_986 protoglobin domain-containing protein -
  CXP43_RS05385 (CXP43_05385) - 1040468..1041991 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  CXP43_RS05390 (CXP43_05390) - 1042116..1042973 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  CXP43_RS05395 (CXP43_05395) - 1043004..1043237 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  CXP43_RS05400 (CXP43_05400) comK 1043552..1044130 (+) 579 WP_003155179.1 competence protein ComK Regulator
  CXP43_RS05405 (CXP43_05405) - 1044276..1044647 (+) 372 WP_014417356.1 iron chaperone -
  CXP43_RS05410 (CXP43_05410) - 1044770..1045279 (+) 510 WP_014417357.1 MepB family protein -
  CXP43_RS05415 (CXP43_05415) - 1045508..1046218 (-) 711 WP_017417404.1 YrpD family protein -
  CXP43_RS05420 (CXP43_05420) - 1046414..1046683 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  CXP43_RS05425 (CXP43_05425) - 1046716..1047033 (-) 318 WP_003155166.1 YbjQ family protein -
  CXP43_RS05430 (CXP43_05430) - 1047075..1048544 (-) 1470 WP_032863809.1 sodium:solute symporter family protein -
  CXP43_RS05435 (CXP43_05435) - 1048541..1048741 (-) 201 WP_007409181.1 DUF3311 domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=259952 CXP43_RS05400 WP_003155179.1 1043552..1044130(+) (comK) [Bacillus velezensis strain Lzh-a42]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=259952 CXP43_RS05400 WP_003155179.1 1043552..1044130(+) (comK) [Bacillus velezensis strain Lzh-a42]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACTATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGTTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTATGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment