Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CSC39_RS01285 Genome accession   NZ_CP030331
Coordinates   71935..72603 (+) Length   222 a.a.
NCBI ID   WP_001352775.1    Uniprot ID   -
Organism   Escherichia coli strain AR_452     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 66935..77603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC39_RS01250 (CSC39_0076) yicC 66954..67817 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  CSC39_RS01260 (CSC39_0077) rph 67944..68660 (+) 717 WP_001247093.1 ribonuclease PH -
  CSC39_RS01265 (CSC39_0078) pyrE 68726..69367 (+) 642 WP_000806162.1 orotate phosphoribosyltransferase -
  CSC39_RS01270 (CSC39_0079) slmA 69404..70000 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CSC39_RS01275 (CSC39_0080) dut 70107..70565 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CSC39_RS01280 (CSC39_0081) coaBC 70543..71763 (-) 1221 WP_000050152.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CSC39_RS01285 (CSC39_0082) radC 71935..72603 (+) 669 WP_001352775.1 DNA repair protein RadC Machinery gene
  CSC39_RS01290 (CSC39_0083) rpmB 72820..73056 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CSC39_RS01295 (CSC39_0084) rpmG 73077..73244 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CSC39_RS01300 (CSC39_0085) mutM 73342..74151 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CSC39_RS01305 (CSC39_0086) coaD 74190..74669 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CSC39_RS01310 (CSC39_0087) waaA 74677..75954 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CSC39_RS01315 (CSC39_0088) rfaQ 76367..77425 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25292.38 Da        Isoelectric Point: 7.9748

>NTDB_id=259948 CSC39_RS01285 WP_001352775.1 71935..72603(+) (radC) [Escherichia coli strain AR_452]
MKNNSQLMMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=259948 CSC39_RS01285 WP_001352775.1 71935..72603(+) (radC) [Escherichia coli strain AR_452]
GTGAAAAACAATTCACAGCTGATGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496