Detailed information NTG0259943

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CXP43_RS01960
• Genome accession: NZ_CP025308
• Coordinates: 389850..390998 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain Lzh-a42
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 384850..395998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXP43_RS01940 (CXP43_01940)	-	385250..385933 (-)	684	WP_014416899.1	ABC transporter ATP-binding protein	-
CXP43_RS01945 (CXP43_01945)	-	385948..387381 (-)	1434	WP_014416900.1	ABC transporter permease	-
CXP43_RS01950 (CXP43_01950)	-	387594..388277 (+)	684	WP_014416901.1	response regulator transcription factor	-
CXP43_RS01955 (CXP43_01955)	-	388264..389691 (+)	1428	WP_088056326.1	sensor histidine kinase	-
CXP43_RS01960 (CXP43_01960)	rapC	389850..390998 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
CXP43_RS01965 (CXP43_01965)	phrC	390982..391101 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
CXP43_RS01970 (CXP43_01970)	-	391252..391362 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
CXP43_RS01975 (CXP43_01975)	-	391442..392806 (-)	1365	WP_014416903.1	aspartate kinase	-
CXP43_RS01980 (CXP43_01980)	ceuB	393220..394173 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
CXP43_RS01985 (CXP43_01985)	-	394163..395110 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
CXP43_RS01990 (CXP43_01990)	-	395104..395862 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=259943 CXP43_RS01960 WP_014304340.1 389850..390998(+) (rapC) [Bacillus velezensis strain Lzh-a42]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=259943 CXP43_RS01960 WP_014304340.1 389850..390998(+) (rapC) [Bacillus velezensis strain Lzh-a42]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCATGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATATACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568