Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CSC44_RS25095 Genome accession   NZ_CP030327
Coordinates   5287835..5288341 (+) Length   168 a.a.
NCBI ID   WP_003103172.1    Uniprot ID   A0A1H2MSY8
Organism   Pseudomonas aeruginosa strain AR_458     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5282835..5293341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC44_RS25080 (CSC44_5041) pelG 5283588..5284958 (+) 1371 WP_003452522.1 exopolysaccharide Pel transporter PelG -
  CSC44_RS25085 (CSC44_5042) - 5285204..5286403 (+) 1200 WP_003103175.1 site-specific integrase -
  CSC44_RS25090 (CSC44_5043) - 5286400..5287464 (+) 1065 WP_003103173.1 PDDEXK nuclease domain-containing protein -
  CSC44_RS25095 (CSC44_5044) radC 5287835..5288341 (+) 507 WP_003103172.1 DNA repair protein RadC Machinery gene
  CSC44_RS25100 (CSC44_5045) - 5288467..5288724 (+) 258 WP_003103170.1 metal-sensing transcriptional repressor -
  CSC44_RS25105 (CSC44_5046) - 5288734..5290044 (+) 1311 WP_003103168.1 MFS transporter -
  CSC44_RS25110 (CSC44_5047) - 5290306..5290656 (+) 351 WP_003103166.1 DUF2958 domain-containing protein -
  CSC44_RS25115 (CSC44_5048) - 5290722..5291000 (+) 279 WP_003103165.1 hypothetical protein -
  CSC44_RS25125 (CSC44_5050) - 5291712..5292482 (+) 771 WP_112292606.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18620.24 Da        Isoelectric Point: 7.2017

>NTDB_id=259928 CSC44_RS25095 WP_003103172.1 5287835..5288341(+) (radC) [Pseudomonas aeruginosa strain AR_458]
MSQLTLSHDTPLMVRDGRGRYRPADADQILEAARQVIEQKMQRGEAFTSPAAVKDYLRAKLAGFEHEVFAVLFLDTRHRL
IDYVEMFHGTIDAAEVHPREVVKQALRLNAAAVIVSHNHPSGNPEPSAADKAMTSQLRQALALVDVRTLDHIIVAGSRTT
SFAERGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=259928 CSC44_RS25095 WP_003103172.1 5287835..5288341(+) (radC) [Pseudomonas aeruginosa strain AR_458]
ATGTCGCAACTGACCCTCTCTCACGATACCCCGCTGATGGTGCGCGATGGCCGTGGGCGCTATCGGCCGGCGGACGCCGA
CCAGATTCTGGAAGCCGCGCGCCAGGTCATCGAACAGAAGATGCAGCGCGGCGAGGCGTTCACTTCGCCGGCGGCGGTGA
AGGACTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCACGAGGTCTTCGCGGTGTTGTTCCTCGACACGCGCCATCGGCTG
ATCGACTACGTGGAGATGTTCCACGGCACGATCGACGCCGCCGAGGTGCATCCGCGCGAGGTGGTGAAGCAGGCACTGCG
GCTCAATGCAGCGGCGGTCATCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCCGATAAGGCGATGA
CCTCGCAGCTTCGGCAGGCGCTGGCGCTGGTGGACGTTCGCACGCTGGATCACATCATTGTCGCTGGAAGCCGTACCACG
TCATTCGCCGAACGCGGCCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(47-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H2MSY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.421

90.476

0.393