Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CXQ83_RS03135 Genome accession   NZ_CP025281
Coordinates   606240..606647 (+) Length   135 a.a.
NCBI ID   WP_198560158.1    Uniprot ID   -
Organism   Campylobacter coli strain YH503     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601240..611647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS03115 (CXQ83_03105) - 602193..603617 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  CXQ83_RS03120 (CXQ83_03110) uvrB 603652..605625 (-) 1974 WP_002787398.1 excinuclease ABC subunit UvrB -
  CXQ83_RS03125 (CXQ83_03115) - 605778..606008 (+) 231 WP_002776426.1 hypothetical protein -
  CXQ83_RS03130 (CXQ83_03120) - 605998..606243 (+) 246 WP_002776428.1 hypothetical protein -
  CXQ83_RS03135 (CXQ83_03125) Cj0683 606240..606647 (+) 408 WP_198560158.1 type II secretion system protein Machinery gene
  CXQ83_RS03140 (CXQ83_03130) - 606682..608520 (+) 1839 WP_002787399.1 primosomal protein N' -
  CXQ83_RS03145 (CXQ83_03135) ispG 608580..609653 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  CXQ83_RS03150 (CXQ83_03140) flgH 609737..610435 (-) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15798.63 Da        Isoelectric Point: 9.6577

>NTDB_id=259825 CXQ83_RS03135 WP_198560158.1 606240..606647(+) (Cj0683) [Campylobacter coli strain YH503]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFIMLILLF

Nucleotide


Download         Length: 408 bp        

>NTDB_id=259825 CXQ83_RS03135 WP_198560158.1 606240..606647(+) (Cj0683) [Campylobacter coli strain YH503]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTATAATGCTGATTTTGC
TATTTTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.992

94.074

0.593

Multiple sequence alignment