Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPD_RS00200 Genome accession   NC_008533
Coordinates   36977..37747 (+) Length   256 a.a.
NCBI ID   WP_000616166.1    Uniprot ID   Q8DRN4
Organism   Streptococcus pneumoniae D39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31977..42747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPD_RS00185 (SPD_0039) - 34024..34461 (+) 438 WP_000076479.1 CoA-binding protein -
  SPD_RS00190 (SPD_0040) - 34652..35662 (-) 1011 WP_000009141.1 YeiH family protein -
  SPD_RS00195 (SPD_0041) - 35811..36980 (+) 1170 WP_000366378.1 pyridoxal phosphate-dependent aminotransferase -
  SPD_RS00200 (SPD_0042) recO 36977..37747 (+) 771 WP_000616166.1 DNA repair protein RecO Machinery gene
  SPD_RS00205 (SPD_0043) plsX 37744..38736 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  SPD_RS00210 (SPD_0044) - 38742..38975 (+) 234 WP_000136447.1 acyl carrier protein -
  SPD_RS00215 (SPD_0045) - 39012..39311 (+) 300 Protein_34 transposase family protein -
  SPD_RS00220 (SPD_0046) blpU 39514..39744 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  SPD_RS11825 (SPD_0047) - 39747..39872 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29818.32 Da        Isoelectric Point: 5.3615

>NTDB_id=25979 SPD_RS00200 WP_000616166.1 36977..37747(+) (recO) [Streptococcus pneumoniae D39]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGTCLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=25979 SPD_RS00200 WP_000616166.1 36977..37747(+) (recO) [Streptococcus pneumoniae D39]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAACCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

100

100

1

Multiple sequence alignment