Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CXR17_RS14440 Genome accession   NZ_CP025276
Coordinates   2820886..2821491 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Johannesburg strain USDA-ARS-USMARC-60984     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2815886..2826491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR17_RS14425 (CXR17_14690) helD 2816103..2818157 (-) 2055 WP_023196810.1 DNA helicase IV -
  CXR17_RS14430 (CXR17_14695) - 2818281..2818727 (+) 447 WP_023196811.1 YccF domain-containing protein -
  CXR17_RS14435 (CXR17_14700) yccS 2818746..2820899 (+) 2154 WP_000950879.1 YccS family putative transporter -
  CXR17_RS14440 (CXR17_14705) sxy/tfoX 2820886..2821491 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  CXR17_RS14445 (CXR17_14710) sulA 2821708..2822217 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  CXR17_RS14450 (CXR17_14715) ompA 2822574..2823626 (+) 1053 WP_001562588.1 porin OmpA -
  CXR17_RS14455 (CXR17_14720) matP 2823698..2824150 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  CXR17_RS14460 (CXR17_14725) - 2824336..2826096 (+) 1761 WP_000156458.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=259770 CXR17_RS14440 WP_001202375.1 2820886..2821491(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Johannesburg strain USDA-ARS-USMARC-60984]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=259770 CXR17_RS14440 WP_001202375.1 2820886..2821491(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Johannesburg strain USDA-ARS-USMARC-60984]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGTGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGTGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGTCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment