Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPAG1_RS07290 | Genome accession | NC_008086 |
| Coordinates | 1497335..1497910 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203555.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HPAG1 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1492335..1502910
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAG1_RS07265 (HPAG1_1435) | uvrD | 1493026..1495071 (+) | 2046 | WP_041200193.1 | DNA helicase UvrD | - |
| HPAG1_RS07270 (HPAG1_1436) | flgA | 1495068..1495724 (+) | 657 | WP_000697660.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPAG1_RS07275 (HPAG1_1437) | - | 1495734..1496297 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| HPAG1_RS07280 (HPAG1_1438) | coaD | 1496297..1496770 (+) | 474 | WP_001169275.1 | pantetheine-phosphate adenylyltransferase | - |
| HPAG1_RS07285 (HPAG1_1439) | tmk | 1496772..1497347 (+) | 576 | WP_000289766.1 | dTMP kinase | - |
| HPAG1_RS07290 (HPAG1_1440) | comFC | 1497335..1497910 (+) | 576 | WP_001203555.1 | ComF family protein | Machinery gene |
| HPAG1_RS08540 | - | 1497943..1499982 (+) | 2040 | Protein_1394 | N-6 DNA methylase | - |
| HPAG1_RS07300 (HPAG1_1444) | - | 1499979..1501190 (+) | 1212 | WP_000580132.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21270.86 Da Isoelectric Point: 8.7588
>NTDB_id=25968 HPAG1_RS07290 WP_001203555.1 1497335..1497910(+) (comFC) [Helicobacter pylori HPAG1]
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLDGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKIMQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGCLRANNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLNLKVRVLDGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKIMQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGCLRANNAVSYAGKSLEFRANNPRNFTFKGDETLDYFLLDDII
TTGTTLKEALKHLKALNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=25968 HPAG1_RS07290 WP_001203555.1 1497335..1497910(+) (comFC) [Helicobacter pylori HPAG1]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGATGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCATGCAAGAACAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGTGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTAAACGATCTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGATGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCAAAGAATTTGTGAAAATCATGCAAGAACAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGTGTTTAAGGGCTAATAATGCTGTTTCGTATGCGGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAACTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAACACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |