Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   CV094_RS08450 Genome accession   NZ_CP025266
Coordinates   1765390..1766031 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii isolate SMC_Paed_Ab_BL01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760390..1771031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV094_RS08430 (CV094_08430) aroK 1761304..1761873 (-) 570 WP_000643712.1 shikimate kinase AroK -
  CV094_RS08435 (CV094_08435) pilQ 1761885..1764047 (-) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  CV094_RS08440 (CV094_08440) pilP 1764115..1764642 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  CV094_RS08445 (CV094_08445) pilO 1764653..1765393 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  CV094_RS08450 (CV094_08450) pilN 1765390..1766031 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  CV094_RS08455 (CV094_08455) pilM 1766031..1767089 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  CV094_RS08460 (CV094_08460) ponA 1767252..1769807 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  CV094_RS08465 (CV094_08465) - 1769825..1770649 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  CV094_RS08470 (CV094_08470) - 1770652..1770984 (-) 333 WP_000169594.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=259667 CV094_RS08450 WP_000201227.1 1765390..1766031(-) (pilN) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=259667 CV094_RS08450 WP_000201227.1 1765390..1766031(-) (pilN) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment