Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPAG1_RS06635 Genome accession   NC_008086
Coordinates   1353739..1355052 (-) Length   437 a.a.
NCBI ID   WP_000653627.1    Uniprot ID   -
Organism   Helicobacter pylori HPAG1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348739..1360052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS06605 (HPAG1_1302) nadC 1349202..1350023 (-) 822 WP_000404104.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPAG1_RS06610 (HPAG1_1303) nadA 1350023..1351033 (-) 1011 WP_001141832.1 quinolinate synthase NadA -
  HPAG1_RS06615 (HPAG1_1304) - 1351023..1351826 (-) 804 WP_000226146.1 phosphatidylserine decarboxylase -
  HPAG1_RS06620 (HPAG1_1305) - 1351820..1352326 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  HPAG1_RS06625 (HPAG1_1306) - 1352339..1352833 (-) 495 WP_041200128.1 hypothetical protein -
  HPAG1_RS06630 (HPAG1_1307) mqnP 1352826..1353668 (-) 843 WP_238374988.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPAG1_RS06635 (HPAG1_1308) comEC/comE3 1353739..1355052 (-) 1314 WP_000653627.1 ComEC/Rec2 family competence protein Machinery gene
  HPAG1_RS06640 (HPAG1_1309) - 1355049..1356515 (-) 1467 WP_000349743.1 replicative DNA helicase -
  HPAG1_RS06645 (HPAG1_1310) - 1356526..1357920 (-) 1395 WP_000954026.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPAG1_RS06650 (HPAG1_1311) crdS 1357923..1359125 (-) 1203 WP_079988471.1 copper-sensing histidine kinase CrdS -
  HPAG1_RS06655 (HPAG1_1312) crdR 1359091..1359732 (-) 642 WP_001169768.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50286.19 Da        Isoelectric Point: 9.8315

>NTDB_id=25966 HPAG1_RS06635 WP_000653627.1 1353739..1355052(-) (comEC/comE3) [Helicobacter pylori HPAG1]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTEIFFKTSSFLARSFQAISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=25966 HPAG1_RS06635 WP_000653627.1 1353739..1355052(-) (comEC/comE3) [Helicobacter pylori HPAG1]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCCTGCTC
GTTCTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACACAATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCAAGCGTGTATTTTCTTTTTTCGCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACGGAAATTTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATTATCGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGTATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCACC
TTTTGAACATGCCTTTAACAATCCCCACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.339

100

0.963

Multiple sequence alignment