Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQW89_RS22445 Genome accession   NZ_CP030281
Coordinates   4274385..4274861 (+) Length   158 a.a.
NCBI ID   WP_001186724.1    Uniprot ID   -
Organism   Escherichia coli strain E308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4269385..4279861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQW89_RS22410 (DQW89_22405) - 4269906..4270850 (-) 945 WP_032216516.1 hypothetical protein -
  DQW89_RS22415 (DQW89_22410) - 4270956..4271840 (+) 885 WP_032216515.1 GTPase -
  DQW89_RS22420 (DQW89_22415) - 4271959..4272636 (+) 678 WP_001097364.1 hypothetical protein -
  DQW89_RS22425 (DQW89_22420) - 4272642..4272875 (+) 234 WP_001278282.1 DUF905 family protein -
  DQW89_RS22435 (DQW89_22430) - 4272974..4273792 (+) 819 WP_053902307.1 DUF932 domain-containing protein -
  DQW89_RS22440 (DQW89_22435) - 4273884..4274369 (+) 486 WP_032216512.1 antirestriction protein -
  DQW89_RS22445 (DQW89_22440) radC 4274385..4274861 (+) 477 WP_001186724.1 RadC family protein Machinery gene
  DQW89_RS22450 (DQW89_22445) yeeT 4274930..4275151 (+) 222 WP_001601167.1 DUF987 domain-containing protein -
  DQW89_RS22455 (DQW89_22450) - 4275170..4275814 (+) 645 Protein_4140 antitoxin of toxin-antitoxin stability system -
  DQW89_RS22460 (DQW89_22455) - 4275833..4276201 (+) 369 WP_032216526.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DQW89_RS22465 (DQW89_22460) cbtA 4276291..4276668 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  DQW89_RS22470 (DQW89_22465) - 4276665..4276814 (+) 150 Protein_4143 DUF5983 family protein -
  DQW89_RS22475 (DQW89_22470) - 4276890..4277087 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  DQW89_RS22480 (DQW89_22475) - 4277172..4278014 (+) 843 WP_001280501.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=259645 DQW89_RS22445 WP_001186724.1 4274385..4274861(+) (radC) [Escherichia coli strain E308]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=259645 DQW89_RS22445 WP_001186724.1 4274385..4274861(+) (radC) [Escherichia coli strain E308]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAGACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCTGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment