Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DQW89_RS05585 Genome accession   NZ_CP030281
Coordinates   1078504..1079019 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain E308     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073504..1084019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQW89_RS05540 (DQW89_05540) csrA 1074091..1074276 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  DQW89_RS05570 (DQW89_05570) yqaB 1075734..1076300 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DQW89_RS05575 (DQW89_05575) yqaA 1076297..1076725 (+) 429 WP_001287454.1 YqaA family protein -
  DQW89_RS05580 (DQW89_05580) gshA 1076798..1078354 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  DQW89_RS05585 (DQW89_05585) luxS 1078504..1079019 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DQW89_RS05590 (DQW89_05590) emrB 1079083..1080621 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DQW89_RS05595 (DQW89_05595) emrA 1080638..1081810 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DQW89_RS05600 (DQW89_05600) emrR 1081937..1082467 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DQW89_RS05605 (DQW89_05605) ygaH 1082558..1082893 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  DQW89_RS05610 (DQW89_05610) ygaZ 1082883..1083620 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=259607 DQW89_RS05585 WP_001130211.1 1078504..1079019(+) (luxS) [Escherichia coli strain E308]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=259607 DQW89_RS05585 WP_001130211.1 1078504..1079019(+) (luxS) [Escherichia coli strain E308]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731