Detailed information NTG0259604

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DQW89_RS05310
• Genome accession: NZ_CP030281
• Coordinates: 1025685..1026677 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E308
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1020685..1031677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQW89_RS05280 (DQW89_05280)	ispD	1020794..1021504 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DQW89_RS05285 (DQW89_05285)	ispF	1021504..1021983 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DQW89_RS05290 (DQW89_05290)	truD	1021980..1023029 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
DQW89_RS05295 (DQW89_05295)	surE	1023010..1023771 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DQW89_RS05300 (DQW89_05300)	pcm	1023765..1024391 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DQW89_RS05305 (DQW89_05305)	nlpD	1024576..1025622 (+)	1047	WP_306308696.1	murein hydrolase activator NlpD	-
DQW89_RS05310 (DQW89_05310)	rpoS	1025685..1026677 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
DQW89_RS05315 (DQW89_05315)	ygbN	1026771..1028135 (-)	1365	WP_000104441.1	GntP family transporter	-
DQW89_RS05320 (DQW89_05320)	ygbM	1028224..1029000 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
DQW89_RS05325 (DQW89_05325)	ygbL	1029005..1029643 (-)	639	WP_001278994.1	aldolase	-
DQW89_RS05330 (DQW89_05330)	otnK	1029640..1030902 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=259604 DQW89_RS05310 WP_000081550.1 1025685..1026677(+) (rpoS) [Escherichia coli strain E308]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=259604 DQW89_RS05310 WP_000081550.1 1025685..1026677(+) (rpoS) [Escherichia coli strain E308]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715