Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CXL14_RS14550 Genome accession   NZ_CP025258
Coordinates   2891016..2891450 (-) Length   144 a.a.
NCBI ID   WP_021493650.1    Uniprot ID   -
Organism   Bacillus sp. SJ-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2886016..2896450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS14515 - 2886031..2886384 (+) 354 WP_007410379.1 multidrug efflux SMR transporter -
  CXL14_RS14520 - 2886398..2886850 (-) 453 WP_014305039.1 OsmC family protein -
  CXL14_RS14525 - 2886910..2887617 (-) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  CXL14_RS14530 - 2887873..2888106 (-) 234 WP_015239897.1 hypothetical protein -
  CXL14_RS14535 - 2888285..2889613 (+) 1329 WP_095272093.1 S8 family peptidase -
  CXL14_RS14540 - 2889805..2890167 (+) 363 WP_007410383.1 hypothetical protein -
  CXL14_RS14545 - 2890201..2890956 (-) 756 WP_101287853.1 YoaK family protein -
  CXL14_RS14550 nucA/comI 2891016..2891450 (-) 435 WP_021493650.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CXL14_RS14555 - 2891739..2892950 (+) 1212 WP_061862630.1 cytochrome P450 -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15480.42 Da        Isoelectric Point: 7.2418

>NTDB_id=259568 CXL14_RS14550 WP_021493650.1 2891016..2891450(-) (nucA/comI) [Bacillus sp. SJ-10]
MNAFMKWAASLLLVISLQVGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=259568 CXL14_RS14550 WP_021493650.1 2891016..2891450(-) (nucA/comI) [Bacillus sp. SJ-10]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGGTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment