Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CXL14_RS11040 Genome accession   NZ_CP025258
Coordinates   2155704..2156471 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus sp. SJ-10     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2150704..2161471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS11010 - 2150987..2153119 (+) 2133 WP_014418406.1 HD family phosphohydrolase -
  CXL14_RS11015 ybeY 2153120..2153593 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  CXL14_RS11020 - 2153574..2153948 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  CXL14_RS11025 - 2154072..2154482 (+) 411 WP_017418172.1 cytidine deaminase -
  CXL14_RS11030 era 2154463..2155368 (+) 906 WP_007408285.1 GTPase Era -
  CXL14_RS11035 - 2155524..2155667 (+) 144 WP_007408286.1 YqzL family protein -
  CXL14_RS11040 recO 2155704..2156471 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  CXL14_RS11045 glyQ 2156773..2157660 (+) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  CXL14_RS11050 glyS 2157653..2159692 (+) 2040 WP_029973407.1 glycine--tRNA ligase subunit beta -
  CXL14_RS11055 ccpN 2159793..2160431 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  CXL14_RS11060 - 2160457..2161269 (+) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=259556 CXL14_RS11040 WP_007408287.1 2155704..2156471(+) (recO) [Bacillus sp. SJ-10]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=259556 CXL14_RS11040 WP_007408287.1 2155704..2156471(+) (recO) [Bacillus sp. SJ-10]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment