Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CXL14_RS03160 Genome accession   NZ_CP025258
Coordinates   610939..611229 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. SJ-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 605939..616229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS03145 - 606161..607486 (-) 1326 WP_014720609.1 G5 and 3D domain-containing protein -
  CXL14_RS03150 - 607621..608388 (-) 768 WP_032864028.1 TatD family hydrolase -
  CXL14_RS03155 metG 608465..610456 (-) 1992 WP_014416719.1 methionine--tRNA ligase -
  CXL14_RS03160 abrB 610939..611229 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  CXL14_RS03165 rsmI 611278..612159 (-) 882 WP_014416718.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CXL14_RS03170 - 612134..612433 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  CXL14_RS03175 - 612420..613163 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  CXL14_RS03180 yabA 613224..613583 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  CXL14_RS03185 ricT 613598..614425 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  CXL14_RS03190 holB 614428..615417 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  CXL14_RS03195 - 615429..615869 (-) 441 WP_004264730.1 DUF327 family protein -
  CXL14_RS03200 darA 615882..616211 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=259526 CXL14_RS03160 WP_169510469.1 610939..611229(+) (abrB) [Bacillus sp. SJ-10]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=259526 CXL14_RS03160 WP_169510469.1 610939..611229(+) (abrB) [Bacillus sp. SJ-10]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment