Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CXL14_RS01640 Genome accession   NZ_CP025258
Coordinates   325089..325526 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. SJ-10     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 320089..330526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXL14_RS01625 - 322975..323337 (-) 363 WP_007409352.1 helix-turn-helix domain-containing protein -
  CXL14_RS01630 hxlA 323569..324204 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  CXL14_RS01635 hxlB 324201..324758 (+) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  CXL14_RS01640 nucA/comI 325089..325526 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CXL14_RS01645 nin/comJ 325547..325945 (+) 399 WP_014416873.1 competence protein ComJ Regulator
  CXL14_RS01650 - 325986..327422 (-) 1437 WP_014416872.1 family 1 glycosylhydrolase -
  CXL14_RS01655 - 327526..327849 (-) 324 WP_007409357.1 YckD family protein -
  CXL14_RS01660 - 327921..328355 (-) 435 WP_014416871.1 RDD family protein -
  CXL14_RS01665 - 328370..329506 (-) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=259521 CXL14_RS01640 WP_003156588.1 325089..325526(+) (nucA/comI) [Bacillus sp. SJ-10]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=259521 CXL14_RS01640 WP_003156588.1 325089..325526(+) (nucA/comI) [Bacillus sp. SJ-10]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAGGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment