Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DQ228_RS03865 Genome accession   NZ_CP030250
Coordinates   734632..735279 (-) Length   215 a.a.
NCBI ID   WP_064411023.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729632..740279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS03850 holA 731381..732415 (+) 1035 WP_014608169.1 DNA polymerase III subunit delta -
  DQ228_RS03855 sodA 732510..733115 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  DQ228_RS03860 - 733212..734591 (+) 1380 WP_024704064.1 serine hydrolase -
  DQ228_RS03865 cclA/cilC 734632..735279 (-) 648 WP_064411023.1 prepilin peptidase Machinery gene
  DQ228_RS03870 - 735388..735909 (+) 522 WP_014608172.1 Dps family protein -
  DQ228_RS03875 - 735998..736435 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  DQ228_RS03880 - 736546..736752 (+) 207 WP_002950395.1 YqgQ family protein -
  DQ228_RS03885 - 736745..737713 (+) 969 WP_011225772.1 ROK family glucokinase -
  DQ228_RS03890 typA 737851..739701 (+) 1851 WP_014608174.1 translational GTPase TypA -
  DQ228_RS03895 - 739721..739993 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24833.97 Da        Isoelectric Point: 8.5469

>NTDB_id=259519 DQ228_RS03865 WP_064411023.1 734632..735279(-) (cclA/cilC) [Streptococcus thermophilus strain CS20]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTLM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=259519 DQ228_RS03865 WP_064411023.1 734632..735279(-) (cclA/cilC) [Streptococcus thermophilus strain CS20]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCC
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.623

98.605

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

40.191

97.209

0.391
  cclA/cilC Streptococcus mitis NCTC 12261

39.151

98.605

0.386
  cclA/cilC Streptococcus pneumoniae Rx1

38.679

98.605

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.679

98.605

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.679

98.605

0.381

Multiple sequence alignment