Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   DQ228_RS01500 Genome accession   NZ_CP030250
Coordinates   276995..278971 (+) Length   658 a.a.
NCBI ID   WP_024009733.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271995..283971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS01480 - 272817..273665 (+) 849 WP_014607963.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  DQ228_RS01485 - 273675..274220 (+) 546 WP_002946071.1 ECF-type riboflavin transporter substrate-binding protein -
  DQ228_RS01490 - 274286..275962 (+) 1677 WP_014607964.1 ABC transporter ATP-binding protein -
  DQ228_RS01495 - 275955..276785 (+) 831 WP_014607965.1 energy-coupling factor transporter transmembrane component T family protein -
  DQ228_RS01500 recP/tkt 276995..278971 (+) 1977 WP_024009733.1 transketolase Machinery gene
  DQ228_RS01505 - 279033..279203 (+) 171 Protein_271 ascorbate 6-phosphate lactonase -
  DQ228_RS01510 - 279220..279891 (-) 672 WP_002946492.1 potassium channel family protein -
  DQ228_RS01515 - 279931..281295 (-) 1365 WP_014607967.1 TrkH family potassium uptake protein -
  DQ228_RS01520 rsmG 281365..282078 (-) 714 WP_002946490.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DQ228_RS01525 - 282375..282911 (+) 537 WP_002946488.1 DUF177 domain-containing protein -
  DQ228_RS01530 - 283067..283756 (+) 690 WP_014607969.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71381.81 Da        Isoelectric Point: 4.7134

>NTDB_id=259495 DQ228_RS01500 WP_024009733.1 276995..278971(+) (recP/tkt) [Streptococcus thermophilus strain CS20]
MSNLSVNAIRFLGVDAINQSNSGHPGVVMGAAPMGYTLFTRQMHVNPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFKD
LSIEELKQFRQWGSKTPGHPEFGHTVGVDATSGPLGQGIAMAVGMAQAERFLASRYNKEGFPIFDHYTYVIAGDGCFMEG
VSAEASSYAGLQKLDKLIVLYDSNDINLDGETKDSFTEDVRARYEAYGWNTEFVQDGTDIEAINAAIESAKASGKPSLIE
VKTVIGHGAPNKQGTNGVHGAPLGPDETAAARENLGWNHAPFEIPKEVYADFKENTVDRGRQAYDTWVALVDEYKQSYPE
LGSELARILEGKDAVEFQSSDFPAVENGYSQATRNSSQDALNAIADKVPTFLGGSADLAHSNMTYIKSEGLQDDEHRLNR
NIQFGVREFAMGAILNGMSLHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLNVYRPADARETQAAWYQAVTSKSTPTALVLTRQNLTVEEGTDFDKVSRGAYVVHETAADFDTILLASGSEVNLAV
ASAKALESEGYKVRVVSVPSTDVFDAQDQAYKEEVLPNAVRRRVAIEMAASLPWYKYVGLDGAVIGIDTFGASAPAAKII
EEYGFTVENIVETVKGMN

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=259495 DQ228_RS01500 WP_024009733.1 276995..278971(+) (recP/tkt) [Streptococcus thermophilus strain CS20]
ATGTCTAACCTTTCAGTAAATGCTATCCGTTTTCTAGGGGTAGATGCGATTAACCAATCTAACTCTGGCCACCCTGGTGT
GGTAATGGGTGCAGCACCAATGGGTTACACTTTGTTTACTAGACAAATGCATGTCAATCCTGAAGTTCCAAATTGGATTA
ATCGTGACCGTTTTGTTTTGTCAGCAGGTCATGGTTCAATGCTTCTTTATGCGCTCCTCCATTTGTCAGGATTTAAAGAT
TTGAGCATTGAAGAGCTTAAACAATTCCGTCAATGGGGTTCTAAGACACCTGGTCACCCAGAATTTGGCCATACAGTTGG
TGTAGATGCTACGTCAGGTCCACTTGGGCAAGGTATTGCTATGGCTGTCGGTATGGCACAAGCTGAACGTTTCTTGGCTT
CTCGATATAACAAGGAAGGCTTCCCAATCTTTGACCATTATACTTATGTTATTGCGGGGGATGGTTGCTTTATGGAAGGC
GTTTCGGCCGAAGCATCATCTTACGCTGGTCTTCAAAAATTGGATAAATTGATTGTCTTGTACGATTCAAATGATATCAA
TCTTGACGGTGAAACTAAAGATTCATTTACTGAAGATGTACGTGCACGTTATGAAGCTTATGGTTGGAACACTGAATTTG
TTCAAGATGGAACAGATATTGAAGCTATCAACGCTGCTATTGAAAGTGCAAAAGCAAGTGGTAAACCATCTTTGATCGAG
GTTAAGACTGTCATTGGTCATGGTGCTCCTAATAAACAAGGAACTAACGGTGTTCACGGTGCTCCTCTTGGACCAGATGA
AACAGCAGCTGCAAGAGAAAACTTGGGTTGGAACCATGCTCCATTTGAAATTCCAAAAGAAGTTTATGCTGATTTCAAGG
AAAATACAGTTGATCGTGGTCGTCAGGCCTATGACACTTGGGTTGCTTTGGTAGATGAGTACAAACAATCTTACCCAGAA
CTTGGTTCTGAACTTGCACGCATTCTTGAAGGTAAGGATGCAGTTGAATTCCAATCTTCAGACTTCCCAGCTGTTGAAAA
TGGTTATTCACAAGCAACTCGTAATTCAAGTCAAGATGCTTTGAATGCTATTGCTGATAAAGTGCCAACATTCCTAGGTG
GTTCTGCGGATTTGGCTCACTCAAATATGACTTACATTAAATCTGAAGGTCTACAAGATGATGAACATCGTCTTAACCGT
AACATTCAATTTGGTGTACGTGAGTTTGCGATGGGAGCAATCTTGAATGGTATGTCTCTCCATGGTGGACTTCGTGTTTA
CGGTGGTACCTTCTTCGTATTCTCAGACTATGTCAAAGCAGCAGTTCGTTTGTCTGCACTTCAAGGACTTCCAGTTACTT
ATGTCTTTACTCACGACTCTATTGCAGTTGGTGAAGATGGACCAACCCATGAACCAATCGAACATCTAGCTGGACTTCGT
GCTATTCCAAACCTTAATGTTTATCGTCCAGCAGACGCGCGTGAGACACAAGCTGCATGGTATCAAGCTGTAACTTCTAA
ATCAACACCTACGGCGCTTGTTTTGACACGTCAAAACTTGACTGTTGAAGAAGGAACAGATTTTGATAAAGTTTCAAGAG
GTGCTTACGTTGTTCATGAAACAGCAGCAGATTTTGATACTATTCTCCTTGCTTCTGGTTCAGAAGTAAATCTTGCAGTA
GCATCAGCAAAAGCTTTAGAATCAGAAGGTTACAAAGTTCGTGTTGTGAGTGTTCCATCAACAGATGTCTTTGATGCACA
AGATCAAGCCTACAAAGAGGAAGTTCTTCCAAATGCAGTTCGTCGTCGTGTAGCAATCGAAATGGCAGCAAGTCTACCAT
GGTATAAATATGTTGGTTTAGACGGTGCTGTGATTGGAATTGATACATTTGGTGCCTCAGCTCCAGCTGCTAAAATTATT
GAAGAATATGGCTTTACAGTAGAAAATATCGTTGAAACAGTAAAAGGTATGAACTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(544-650)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

74.581

99.848

0.745

Multiple sequence alignment