Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   BH100B_RS05340 Genome accession   NZ_CP025251
Coordinates   1067888..1068517 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BH100 substr. MG2017     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062888..1073517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BH100B_RS05315 (BH100B_01023) ycbZ 1063290..1065050 (-) 1761 WP_000156496.1 Lon protease family protein -
  BH100B_RS05320 (BH100B_01024) matP 1065236..1065688 (+) 453 WP_000877152.1 macrodomain Ter protein MatP -
  BH100B_RS05325 (BH100B_01025) ompA 1065764..1066804 (-) 1041 WP_001313715.1 porin OmpA -
  BH100B_RS05335 (BH100B_01027) sulA 1067160..1067669 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  BH100B_RS05340 (BH100B_01028) sxy/tfoX 1067888..1068517 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  BH100B_RS05345 (BH100B_01029) yccS 1068480..1070642 (-) 2163 WP_000875067.1 YccS family putative transporter -
  BH100B_RS05350 (BH100B_01030) yccF 1070652..1071098 (-) 447 WP_001261235.1 YccF domain-containing protein -
  BH100B_RS05355 (BH100B_01031) helD 1071221..1073275 (+) 2055 WP_001541157.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=259416 BH100B_RS05340 WP_000839153.1 1067888..1068517(+) (sxy/tfoX) [Escherichia coli strain BH100 substr. MG2017]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=259416 BH100B_RS05340 WP_000839153.1 1067888..1068517(+) (sxy/tfoX) [Escherichia coli strain BH100 substr. MG2017]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment