Detailed information NTG0259409

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DQ225_RS02125
• Genome accession: NZ_CP030240
• Coordinates: 426469..427461 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain ER1709
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 421469..432461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQ225_RS02105 (DQ225_02190)	otnK	422245..423411 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
DQ225_RS02110 (DQ225_02195)	ygbL	423503..424141 (+)	639	WP_001278991.1	aldolase	-
DQ225_RS02115 (DQ225_02200)	ygbM	424146..424922 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
DQ225_RS02120 (DQ225_02205)	ygbN	425011..426375 (+)	1365	WP_000104441.1	GntP family transporter	-
DQ225_RS02125 (DQ225_02210)	rpoS	426469..427461 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
DQ225_RS02130 (DQ225_02215)	nlpD	427524..428617 (-)	1094	Protein_408	murein hydrolase activator NlpD	-
DQ225_RS02135 (DQ225_02220)	pcm	428802..429428 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DQ225_RS02140 (DQ225_02225)	surE	429422..430183 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DQ225_RS02145 (DQ225_02230)	truD	430164..431213 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DQ225_RS02150 (DQ225_02235)	ispF	431210..431689 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DQ225_RS02155 (DQ225_02240)	ispD	431689..432398 (-)	710	Protein_413	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=259409 DQ225_RS02125 WP_000081588.1 426469..427461(-) (rpoS) [Escherichia coli strain ER1709]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=259409 DQ225_RS02125 WP_000081588.1 426469..427461(-) (rpoS) [Escherichia coli strain ER1709]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715