Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AW88_RS15195 Genome accession   NZ_CP025248
Coordinates   2967315..2967920 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962315..2972920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW88_RS15180 (AW88_15485) helD 2962532..2964586 (-) 2055 WP_000420505.1 DNA helicase IV -
  AW88_RS15185 (AW88_15490) - 2964710..2965156 (+) 447 WP_001261222.1 YccF domain-containing protein -
  AW88_RS15190 (AW88_15495) yccS 2965175..2967328 (+) 2154 WP_000950881.1 YccS family putative transporter -
  AW88_RS15195 (AW88_15500) sxy/tfoX 2967315..2967920 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AW88_RS15200 (AW88_15505) sulA 2968137..2968646 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  AW88_RS15205 (AW88_15510) ompA 2969003..2970055 (+) 1053 WP_022630818.1 porin OmpA -
  AW88_RS15210 (AW88_15515) matP 2970127..2970579 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AW88_RS15215 (AW88_15520) - 2970765..2972525 (+) 1761 WP_000156459.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=259405 AW88_RS15195 WP_001202375.1 2967315..2967920(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=259405 AW88_RS15195 WP_001202375.1 2967315..2967920(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331]
ATGAGAGCGCTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment