Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DQ225_RS01660 Genome accession   NZ_CP030240
Coordinates   336298..336780 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain ER1709     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 331298..341780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ225_RS22805 - 331914..332066 (-) 153 Protein_316 glutaredoxin domain-containing protein -
  DQ225_RS01640 (DQ225_01720) - 332079..333088 (-) 1010 Protein_317 arsenic transporter -
  DQ225_RS01645 (DQ225_01725) yfjW 333230..334933 (+) 1704 WP_000896263.1 protein YfjW -
  DQ225_RS01650 (DQ225_01730) - 335544..335728 (+) 185 Protein_319 DUF905 family protein -
  DQ225_RS01655 (DQ225_01735) yfjX 335831..336289 (+) 459 WP_000211841.1 antirestriction protein -
  DQ225_RS01660 (DQ225_01740) radC 336298..336780 (+) 483 WP_001407480.1 RadC family protein Machinery gene
  DQ225_RS01665 (DQ225_01745) ypjJ 336789..336989 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  DQ225_RS01670 (DQ225_01750) yfjZ 337027..337344 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  DQ225_RS01675 (DQ225_01755) ypjF 337365..337694 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=259405 DQ225_RS01660 WP_001407480.1 336298..336780(+) (radC) [Escherichia coli strain ER1709]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=259405 DQ225_RS01660 WP_001407480.1 336298..336780(+) (radC) [Escherichia coli strain ER1709]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375

Multiple sequence alignment