Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JSMCR1_RS20860 Genome accession   NZ_CP030152
Coordinates   4298854..4299330 (+) Length   158 a.a.
NCBI ID   WP_053289525.1    Uniprot ID   -
Organism   Escherichia coli strain JSMCR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4293854..4304330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSMCR1_RS20825 (JSMCR1_4199) - 4293951..4295081 (-) 1131 WP_047928958.1 hypothetical protein -
  JSMCR1_RS20830 (JSMCR1_4200) - 4295266..4296150 (+) 885 WP_256625250.1 GTPase family protein -
  JSMCR1_RS20835 (JSMCR1_4201) - 4296269..4296946 (+) 678 WP_001097368.1 hypothetical protein -
  JSMCR1_RS20840 (JSMCR1_4202) - 4296952..4297185 (+) 234 WP_001278287.1 DUF905 family protein -
  JSMCR1_RS20845 (JSMCR1_4203) - 4297275..4298093 (+) 819 WP_256625251.1 DUF932 domain-containing protein -
  JSMCR1_RS20850 (JSMCR1_4204) - 4298119..4298259 (-) 141 WP_000997937.1 hypothetical protein -
  JSMCR1_RS20855 (JSMCR1_4205) - 4298359..4298838 (+) 480 WP_001696591.1 antirestriction protein -
  JSMCR1_RS20860 (JSMCR1_4206) radC 4298854..4299330 (+) 477 WP_053289525.1 DNA repair protein RadC Machinery gene
  JSMCR1_RS20865 (JSMCR1_4207) - 4299417..4299638 (+) 222 WP_000692295.1 DUF987 domain-containing protein -
  JSMCR1_RS20870 (JSMCR1_4208) - 4299657..4300304 (+) 648 WP_000094918.1 hypothetical protein -
  JSMCR1_RS20875 (JSMCR1_4209) - 4300354..4300722 (+) 369 WP_001285485.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JSMCR1_RS20880 (JSMCR1_4210) - 4300812..4301189 (+) 378 WP_000854718.1 TA system toxin CbtA family protein -
  JSMCR1_RS20885 (JSMCR1_4211) - 4301186..4301674 (+) 489 WP_000761678.1 DUF5983 family protein -
  JSMCR1_RS20890 (JSMCR1_4212) - 4301686..4301883 (+) 198 WP_000839239.1 DUF957 domain-containing protein -
  JSMCR1_RS20895 (JSMCR1_4213) - 4301968..4302834 (+) 867 WP_001280433.1 DUF4942 domain-containing protein -
  JSMCR1_RS20900 (JSMCR1_4214) - 4302906..4303169 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  JSMCR1_RS20905 (JSMCR1_4215) - 4303166..4303492 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JSMCR1_RS26260 - 4303956..4304115 (+) 160 Protein_4112 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17598.21 Da        Isoelectric Point: 7.2517

>NTDB_id=259381 JSMCR1_RS20860 WP_053289525.1 4298854..4299330(+) (radC) [Escherichia coli strain JSMCR1]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=259381 JSMCR1_RS20860 WP_053289525.1 4298854..4299330(+) (radC) [Escherichia coli strain JSMCR1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399