Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JSMCR1_RS05450 Genome accession   NZ_CP030152
Coordinates   1139875..1140390 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JSMCR1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134875..1145390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSMCR1_RS05405 (JSMCR1_1101) csrA 1135462..1135647 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  JSMCR1_RS05435 (JSMCR1_1102) yqaB 1137105..1137671 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  JSMCR1_RS05440 (JSMCR1_1103) yqaA 1137668..1138096 (+) 429 WP_001287454.1 YqaA family protein -
  JSMCR1_RS05445 (JSMCR1_1104) gshA 1138169..1139725 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  JSMCR1_RS05450 (JSMCR1_1105) luxS 1139875..1140390 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  JSMCR1_RS05455 (JSMCR1_1106) emrB 1140454..1141992 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  JSMCR1_RS05460 (JSMCR1_1107) emrA 1142009..1143181 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  JSMCR1_RS05465 (JSMCR1_1109) emrR 1143308..1143838 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  JSMCR1_RS05470 (JSMCR1_1110) ygaH 1143929..1144264 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  JSMCR1_RS05475 (JSMCR1_1111) ygaZ 1144254..1144991 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=259343 JSMCR1_RS05450 WP_001130211.1 1139875..1140390(+) (luxS) [Escherichia coli strain JSMCR1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=259343 JSMCR1_RS05450 WP_001130211.1 1139875..1140390(+) (luxS) [Escherichia coli strain JSMCR1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731